Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40228 | Canola | cytosol, extracellular, nucleus | 35.22 | 45.16 |
| CDY41224 | Canola | cytosol, plasma membrane | 74.84 | 28.81 |
| CDX96200 | Canola | extracellular, plasma membrane | 71.07 | 27.23 |
| CDX78283 | Canola | extracellular, plasma membrane | 71.07 | 27.23 |
| CDX78279 | Canola | cytosol | 65.41 | 27.01 |
| AT3G54910.2 | Thale cress | cytosol | 59.75 | 25.47 |
| CDX73430 | Canola | extracellular, vacuole | 65.41 | 25.06 |
| CDY48142 | Canola | cytosol | 30.82 | 24.87 |
| CDY40231 | Canola | cytosol | 64.15 | 24.29 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 63.52 | 24.28 |
| CDX78281 | Canola | cytosol | 45.28 | 22.5 |
| CDY41221 | Canola | cytosol | 45.28 | 22.02 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 53.46 | 21.74 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 62.89 | 21.64 |
| CDX79668 | Canola | cytosol | 47.17 | 21.25 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 33.33 | 20.7 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 40.88 | 20.31 |
| CDY67485 | Canola | cytosol | 44.65 | 19.61 |
| CDY72604 | Canola | extracellular | 35.85 | 19.39 |
| CDY32785 | Canola | cytosol | 44.03 | 18.97 |
| CDX84569 | Canola | mitochondrion | 31.45 | 18.94 |
| CDY23937 | Canola | mitochondrion | 28.93 | 11.89 |
| CDY17463 | Canola | cytosol | 21.38 | 11.41 |
| CDY52958 | Canola | cytosol | 13.84 | 10.84 |
| CDY01651 | Canola | mitochondrion | 22.01 | 10.36 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 20.13 | 10.29 |
| CDX74515 | Canola | cytosol | 30.19 | 10.23 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 23.27 | 8.73 |
| CDY40226 | Canola | cytosol | 5.66 | 8.65 |
| CDX73432 | Canola | extracellular, plasma membrane | 22.01 | 8.22 |
| CDY22940 | Canola | plasma membrane | 28.3 | 5.32 |
| CDX73429 | Canola | mitochondrion | 2.52 | 3.25 |
| CDY41219 | Canola | cytosol | 3.14 | 2.96 |
| CDY35566 | Canola | cytosol | 2.52 | 2.92 |
| CDX84780 | Canola | cytosol | 2.52 | 2.2 |
| CDY40230 | Canola | cytosol | 2.52 | 2.15 |
| CDY35372 | Canola | cytosol | 1.26 | 2.04 |
| CDY22729 | Canola | nucleus | 1.89 | 1.32 |
| CDX91627 | Canola | cytosol | 1.89 | 0.92 |
| CDY27080 | Canola | cytosol | 1.89 | 0.88 |
| CDY34607 | Canola | cytosol | 0.63 | 0.7 |
| CDY09047 | Canola | cytosol | 1.89 | 0.67 |
| CDY53464 | Canola | cytosol | 1.26 | 0.49 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 1.26 | 0.49 |
| CDY38511 | Canola | cytosol | 0.63 | 0.24 |
| CDY47798 | Canola | plasma membrane | 0.63 | 0.24 |
| CDY66257 | Canola | mitochondrion | 0.63 | 0.23 |
Protein Annotations
| EnsemblPlants:CDY41220 | EnsemblPlantsGene:GSBRNA2T00072640001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF07723 | ProteinID:CDY41220 | ProteinID:CDY41220.1 | SUPFAM:SSF52047 |
| UniParc:UPI0004EE63BC | UniProt:A0A078HRK0 | MapMan:35.1 | : | : | : |
Description
BnaC08g26380DBnaC08g26380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRK0]
Coordinates
chrLK032493:-:170204..170728
Molecular Weight (calculated)
18411.7 Da
IEP (calculated)
7.370
GRAVY (calculated)
-0.043
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLPKLEYGH RRCSEPESEK LQCFLERNLP LHRAPVIESF RLQMLALSHC LRELDVLYEP YPAKPNILPS NLYTCKSLVV LKLDGGILLN VPRMVSLPSL
101: KTLELHEVKY SKGETLQRLL SNCPILEDLV VYLRERDTTT RNLTVVCSIF AEIDILYTQ
101: KTLELHEVKY SKGETLQRLL SNCPILEDLV VYLRERDTTT RNLTVVCSIF AEIDILYTQ
001: MDRIIGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLFVLLLRCD DIGMFIVIVP
201: SLQRLSLYLS PRCNLEGFVI VLDTPLEYFK LVDRNYDRHP YMIENMPKLT SAYVEVISAD LKSLVESITS VKYLTIFSEV ICLNLSTARL
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLFVLLLRCD DIGMFIVIVP
201: SLQRLSLYLS PRCNLEGFVI VLDTPLEYFK LVDRNYDRHP YMIENMPKLT SAYVEVISAD LKSLVESITS VKYLTIFSEV ICLNLSTARL
Arabidopsis Description
F-box protein At4g09920 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F1]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.