Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35372 | Canola | cytosol | 27.74 | 38.78 |
| CDX84780 | Canola | cytosol | 50.37 | 37.91 |
| CDY34607 | Canola | cytosol | 37.96 | 36.62 |
| AT5G38580.1 | Thale cress | cytosol | 40.15 | 32.74 |
| CDY41219 | Canola | cytosol | 38.69 | 31.36 |
| CDY40226 | Canola | cytosol | 21.9 | 28.85 |
| CDY40230 | Canola | cytosol | 35.77 | 26.34 |
| CDY52958 | Canola | cytosol | 37.96 | 25.62 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 73.72 | 23.82 |
| CDX84569 | Canola | mitochondrion | 43.8 | 22.73 |
| CDY17463 | Canola | cytosol | 44.53 | 20.47 |
| CDY22729 | Canola | nucleus | 33.58 | 20.18 |
| CDY72604 | Canola | extracellular | 40.15 | 18.71 |
| CDY23937 | Canola | mitochondrion | 51.09 | 18.09 |
| CDX78281 | Canola | cytosol | 40.15 | 17.19 |
| CDX73429 | Canola | mitochondrion | 15.33 | 17.07 |
| CDY67485 | Canola | cytosol | 44.53 | 16.85 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 38.69 | 16.56 |
| CDY32785 | Canola | cytosol | 44.53 | 16.53 |
| CDY41221 | Canola | cytosol | 39.42 | 16.51 |
| AT5G38590.2 | Thale cress | cytosol | 48.91 | 16.34 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 32.85 | 14.47 |
| CDY48142 | Canola | cytosol | 20.44 | 14.21 |
| CDX74515 | Canola | cytosol | 48.18 | 14.07 |
| CDX79668 | Canola | cytosol | 35.77 | 13.88 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 39.42 | 13.81 |
| CDX78283 | Canola | extracellular, plasma membrane | 41.61 | 13.73 |
| CDX96200 | Canola | extracellular, plasma membrane | 41.61 | 13.73 |
| CDX73430 | Canola | extracellular, vacuole | 40.88 | 13.49 |
| CDX78279 | Canola | cytosol | 37.23 | 13.25 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 24.09 | 12.89 |
| CDY41224 | Canola | cytosol, plasma membrane | 38.69 | 12.83 |
| CDY40231 | Canola | cytosol | 38.69 | 12.62 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 42.34 | 12.55 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 37.23 | 12.26 |
| CDY53464 | Canola | cytosol | 36.5 | 12.25 |
| CDY38511 | Canola | cytosol | 36.5 | 12.2 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 36.5 | 12.2 |
| CDY01651 | Canola | mitochondrion | 29.93 | 12.13 |
| CDY47798 | Canola | plasma membrane | 37.23 | 12.0 |
| CDX91627 | Canola | cytosol | 27.74 | 11.69 |
| CDY66257 | Canola | mitochondrion | 36.5 | 11.63 |
| CDX73432 | Canola | extracellular, plasma membrane | 35.04 | 11.27 |
| CDY09047 | Canola | cytosol | 36.5 | 11.09 |
| CDY27080 | Canola | cytosol | 27.01 | 10.88 |
| CDY22940 | Canola | plasma membrane | 35.77 | 5.79 |
| CDY41220 | Canola | cytosol | 2.92 | 2.52 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 0.73 | 0.81 |
Protein Annotations
| EnsemblPlants:CDY35566 | EnsemblPlantsGene:GSBRNA2T00058880001 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | ProteinID:CDY35566 | ProteinID:CDY35566.1 |
| UniParc:UPI0004EED595 | UniProt:A0A078HCY0 | MapMan:35.1 | : | : | : |
Description
BnaC05g27150DBnaC05g27150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCY0]
Coordinates
chrLK032355:+:103947..104517
Molecular Weight (calculated)
15261.4 Da
IEP (calculated)
4.635
GRAVY (calculated)
0.115
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKLEKAHVD VVSFVVKNVI GSVTSVKHLT VCSEDVYGDG IVFDQLEHLK LCICKDDSSN VLAQFLKDSP NLRVLVISQL DLHADLKTNE MGFWNHPSSV
101: PECMLAVLST DFELGRLLCI KLRIKDDEDG DSSFEIV
101: PECMLAVLST DFELGRLLCI KLRIKDDEDG DSSFEIV
001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
Arabidopsis Description
FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.