CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35372	Canola	cytosol	16.1	67.35
CDY53464	Canola	cytosol	64.63	64.95
CDY55715	Canola	cytosol, nucleus, plasma membrane	63.66	63.66
AT2G26860.2	Thale cress	cytosol	60.49	61.23
CDY27080	Canola	cytosol	43.17	52.06
CDX91627	Canola	cytosol	40.24	50.77
CDY34607	Canola	cytosol	17.56	50.7
CDY22729	Canola	nucleus	23.9	42.98
CDY47798	Canola	plasma membrane	40.73	39.29
CDY66257	Canola	mitochondrion	39.76	37.91
CDY35566	Canola	cytosol	12.2	36.5
CDY09047	Canola	cytosol	37.56	34.15
CDX84780	Canola	cytosol	14.39	32.42
CDY41219	Canola	cytosol	11.71	28.4
CDY40230	Canola	cytosol	11.71	25.81
CDY17463	Canola	cytosol	18.54	25.5
CDX73429	Canola	mitochondrion	7.56	25.2
CDX84569	Canola	mitochondrion	15.12	23.48
CDY52958	Canola	cytosol	11.22	22.66
CDY72604	Canola	extracellular	16.1	22.45
CDY40226	Canola	cytosol	5.61	22.12
CDY32785	Canola	cytosol	19.27	21.41
CDX73428	Canola	cytosol, extracellular, plasma membrane	16.59	21.25
CDY22940	Canola	plasma membrane	43.66	21.16
CDY67485	Canola	cytosol	18.54	20.99
CDX78281	Canola	cytosol	15.12	19.38
CDY41221	Canola	cytosol	14.88	18.65
CDY64738	Canola	extracellular, nucleus, peroxisome	13.41	17.68
CDY23937	Canola	mitochondrion	16.59	17.57
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	17.8	17.22
CDY16725	Canola	cytosol, extracellular, nucleus	10.49	16.8
CDY40225	Canola	endoplasmic reticulum, extracellular	15.61	16.37
CDX78279	Canola	cytosol	15.37	16.36
CDX74515	Canola	cytosol	17.8	15.56
CDX73431	Canola	endoplasmic reticulum, plasma membrane	15.61	15.38
CDY41224	Canola	cytosol, plasma membrane	15.37	15.25
CDY48142	Canola	cytosol	7.32	15.23
CDX78283	Canola	extracellular, plasma membrane	15.37	15.18
CDX96200	Canola	extracellular, plasma membrane	15.37	15.18
CDX73430	Canola	extracellular, vacuole	15.12	14.94
CDY01651	Canola	mitochondrion	12.2	14.79
CDY40231	Canola	cytosol	15.12	14.76
CDX73432	Canola	extracellular, plasma membrane	15.12	14.55
CDX79668	Canola	cytosol	12.44	14.45
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	14.88	13.2
CDY40228	Canola	cytosol, extracellular, nucleus	3.66	12.1
CDY41220	Canola	cytosol	0.24	0.63

Protein Annotations

EnsemblPlants:CDY38511	EnsemblPlantsGene:GSBRNA2T00066144001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:FBD	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
ProteinID:CDY38511	ProteinID:CDY38511.1	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF4B03
UniProt:A0A078HLP1	MapMan:35.1	:	:	:	:

Description

BnaC03g26860DBnaC03g26860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLP1]

Coordinates

chrLK032425:+:57825..59221

Molecular Weight (calculated)

47445.3 Da

IEP (calculated)

5.879

GRAVY (calculated)

-0.070

Length

410 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVKILSFVP TEVAVSTSIL SKRWKFVWMW VRKLEFVMNH FGPDIALQDF INKNLPLLRA PVIEKFRLQC FYKSFRPEDI NKWVGITVSR
101: CIRELDINYF SFCHKEELAM LLPSSLYTCK SLVTLKLNGH RLLVDVPRTV SLPSLKTLLL HEVTYSTEDS LRLLLSYCPL LEGLVIGRDS DDHIRGIIII
201: SPSLQRLTLP IDGGASYSNE YVIVTPSLKY IKVENYAAEG FSYLVAHMPK VEEADIIAQN QHHLEKLFES ITSVKRLSLN VWVNEEEEYM YHDGIYFSQL
301: EYLKLCISFD YWLKLLFRLL QDSPKLRVLK LYVSCDDSRK YEAGSWNNDQ SSVPECLLEN LESFEFAGYR GRPEERDFVS FIFKNACRLK SSSITAPLYP
401: DEETCSSTET

Best Arabidopsis Sequence Match ( AT2G26860.2 )
(BLAST)

001: MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR
101: RVRELIINYC DLSWLDKPVV LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC PVLEDLTIHR DMHDNVKTLV
201: IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
301: HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS
401: CYVLE

Arabidopsis Description

FBD-associated F-box protein At2g26860 [Source:UniProtKB/Swiss-Prot;Acc:Q84X02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.