CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40231	Canola	cytosol	68.99	68.33
CDY41221	Canola	cytosol	53.61	68.2
CDY41224	Canola	cytosol, plasma membrane	66.83	67.31
CDX78281	Canola	cytosol	51.68	67.19
CDY72604	Canola	extracellular	47.36	67.01
CDX73430	Canola	extracellular, vacuole	66.11	66.27
CDY40225	Canola	endoplasmic reticulum, extracellular	62.02	65.98
CDX96200	Canola	extracellular, plasma membrane	64.9	65.06
CDX78283	Canola	extracellular, plasma membrane	64.9	65.06
CDX73428	Canola	cytosol, extracellular, plasma membrane	49.76	64.69
CDY40228	Canola	cytosol, extracellular, nucleus	19.23	64.52
CDY41220	Canola	cytosol	24.28	63.52
AT3G54910.2	Thale cress	cytosol	56.01	62.47
CDX78279	Canola	cytosol	57.69	62.34
CDY41219	Canola	cytosol	25.0	61.54
CDX73429	Canola	mitochondrion	17.31	58.54
CDY67485	Canola	cytosol	50.72	58.29
CDY40230	Canola	cytosol	25.96	58.06
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	64.18	57.79
CDY32785	Canola	cytosol	50.72	57.18
CDY17463	Canola	cytosol	40.87	57.05
CDX79668	Canola	cytosol	47.36	55.81
CDX84569	Canola	mitochondrion	34.62	54.55
CDY40226	Canola	cytosol	12.98	51.92
CDX84780	Canola	cytosol	20.67	47.25
CDY23937	Canola	mitochondrion	41.35	44.44
CDY48142	Canola	cytosol	20.67	43.65
CDY16725	Canola	cytosol, extracellular, nucleus	26.44	42.97
CDX73432	Canola	extracellular, plasma membrane	41.83	40.85
CDY52958	Canola	cytosol	19.47	39.9
CDY01651	Canola	mitochondrion	31.49	38.76
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	39.42	38.68
CDX74515	Canola	cytosol	43.51	38.59
CDY64738	Canola	extracellular, nucleus, peroxisome	28.37	37.94
CDY35566	Canola	cytosol	12.26	37.23
CDY34607	Canola	cytosol	11.54	33.8
CDY35372	Canola	cytosol	7.93	33.67
CDY22729	Canola	nucleus	15.38	28.07
CDY55715	Canola	cytosol, nucleus, plasma membrane	16.59	16.83
CDY09047	Canola	cytosol	18.03	16.63
CDY47798	Canola	plasma membrane	16.83	16.47
CDY53464	Canola	cytosol	15.62	15.93
CDY38511	Canola	cytosol	15.38	15.61
CDY66257	Canola	mitochondrion	14.9	14.42
CDY22940	Canola	plasma membrane	29.09	14.3
CDX91627	Canola	cytosol	9.86	12.62
CDY27080	Canola	cytosol	9.62	11.76

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX73431	ProteinID:CDX73431	ProteinID:CDX73431.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00108928001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EDB49C	SEG:seg	:	:	:	:

Description

BnaC08g25720D

Coordinates

chrLK031799:+:317304..318700

Molecular Weight (calculated)

47954.8 Da

IEP (calculated)

6.570

GRAVY (calculated)

0.088

Length

416 amino acids

Sequence
(BLAST)

001: MDRISELSDE LLVKILLLVP TKVAVSTSIL SKRWKYLWMW LPKLEFSYRH VVDPECERLQ SFLDRNLPLH RAPVIESFRF YICCSCLKPK NIKMWVSTAV
101: SHCLRELDIS RRSDSPDKPD ILPSILFTCK SLVVLKLVGH ILLDVPRMVS LPSLKTLQLL RVRYFNEETL QRLLSNCPVL EDLVLVLSNG DTTEKLTVVV
201: SSLLSLSLYL SHYLKIDGYV IETPSLKYFK LVDDSCRNHY CLIENMPFLV EAYLDVNLPD INSLIGSIAS VKRLEICSEA IMMLDEGFVF NQLEHLEVCL
301: CKDHSYNQLV RLLNSSSNLQ GLRLFYMDIH YTPKRGYWNQ PTTVPECLLS SLQSLSWSLY TGEPQERDSL VYILKHALHL KTATVESCEC EVPRSEMLKE
401: LELSYRASAA CQLMFE

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.