CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41219	Canola	cytosol	56.1	40.83
CDY40230	Canola	cytosol	52.03	34.41
CDX84780	Canola	cytosol	43.9	29.67
CDX78281	Canola	cytosol	61.79	23.75
CDX84569	Canola	mitochondrion	47.97	22.35
CDY72604	Canola	extracellular	52.85	22.11
CDY41221	Canola	cytosol	55.28	20.8
CDX73428	Canola	cytosol, extracellular, plasma membrane	52.85	20.31
CDX78283	Canola	extracellular, plasma membrane	66.67	19.76
CDX96200	Canola	extracellular, plasma membrane	66.67	19.76
CDX78279	Canola	cytosol	60.16	19.22
CDY17463	Canola	cytosol	43.9	18.12
CDX73430	Canola	extracellular, vacuole	60.98	18.07
CDX73431	Canola	endoplasmic reticulum, plasma membrane	58.54	17.31
CDY41224	Canola	cytosol, plasma membrane	56.91	16.95
CDY40225	Canola	endoplasmic reticulum, extracellular	52.85	16.62
CDX73432	Canola	extracellular, plasma membrane	54.47	15.73
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	58.54	15.58
CDX79668	Canola	cytosol	44.72	15.58
CDY34607	Canola	cytosol	17.89	15.49
CDY35566	Canola	cytosol	17.07	15.33
CDY40231	Canola	cytosol	51.22	15.0
CDY67485	Canola	cytosol	43.9	14.92
CDY32785	Canola	cytosol	44.72	14.91
CDY23937	Canola	mitochondrion	45.53	14.47
CDY01651	Canola	mitochondrion	39.02	14.2
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	46.34	13.44
CDY48142	Canola	cytosol	19.51	12.18
CDX74515	Canola	cytosol	39.84	10.45
CDY16725	Canola	cytosol, extracellular, nucleus	19.51	9.38
CDY22729	Canola	nucleus	15.45	8.33
CDY35372	Canola	cytosol	6.5	8.16
CDY55715	Canola	cytosol, nucleus, plasma membrane	26.83	8.05
CDY47798	Canola	plasma membrane	26.83	7.76
CDY53464	Canola	cytosol	25.2	7.6
CDY38511	Canola	cytosol	25.2	7.56
Bra002819.1-P	Field mustard	extracellular, plasma membrane	44.72	7.23
CDY09047	Canola	cytosol	25.2	6.87
CDY64738	Canola	extracellular, nucleus, peroxisome	17.07	6.75
CDX91627	Canola	cytosol	17.07	6.46
CDY27080	Canola	cytosol	17.07	6.18
CDY40226	Canola	cytosol	4.88	5.77
CDY66257	Canola	mitochondrion	17.89	5.12
CDY52958	Canola	cytosol	8.13	4.93
CDY22940	Canola	plasma membrane	29.27	4.26
CDY41220	Canola	cytosol	3.25	2.52
CDY40228	Canola	cytosol, extracellular, nucleus	2.44	2.42

Protein Annotations

EnsemblPlants:CDX73429	EnsemblPlantsGene:GSBRNA2T00108926001	InterPro:FBD	PANTHER:PTHR32212	PFAM:PF08387	ProteinID:CDX73429
ProteinID:CDX73429.1	SMART:SM00579	UniParc:UPI0004EE4FA6	MapMan:35.1	:	:

Description

BnaC08g25740D

Coordinates

chrLK031799:+:311419..312362

Molecular Weight (calculated)

14264.2 Da

IEP (calculated)

10.317

GRAVY (calculated)

-0.643

Length

123 amino acids

Sequence
(BLAST)

001: MNSRRSITTP RNQVTHTVRG LHRQTLKQPS RTILKNPRPR VMDEWNQPNT VPECLFSSLQ RLSWSEYTGE PQERDTVVYI LKHALHLKTA TIKSSELEVP
101: KFEMLKELSL SSRASAACQL MFE

Best Arabidopsis Sequence Match ( AT5G38580.1 )
(BLAST)

001: MYLMNMPNLR EAYVDVVSSD ILQYDGFDDG YVFNQLKHLN LCVCKEESSN LLGQLLKDSP NLRILDISVV KDHGTDERNG MVSWNQPNFV PECLLSSLQT
101: LLWSRYFGRQ QDRDIAVYIL KNACHLKTAT ILADTDEHDV PNLQMIKELA LSLRTSVICQ LVFVEYLN

Arabidopsis Description

FBD-like domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.