Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17463 | Canola | cytosol | 77.35 | 93.96 |
| CDY32785 | Canola | cytosol | 93.09 | 91.33 |
| CDY41219 | Canola | cytosol | 25.97 | 55.62 |
| CDX96200 | Canola | extracellular, plasma membrane | 59.94 | 52.29 |
| CDX78283 | Canola | extracellular, plasma membrane | 59.94 | 52.29 |
| CDY41224 | Canola | cytosol, plasma membrane | 58.56 | 51.33 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 58.29 | 50.72 |
| CDX84780 | Canola | cytosol | 25.14 | 50.0 |
| CDY40231 | Canola | cytosol | 58.01 | 50.0 |
| CDX73430 | Canola | extracellular, vacuole | 56.91 | 49.64 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 53.59 | 49.62 |
| CDX79668 | Canola | cytosol | 48.34 | 49.58 |
| CDY72604 | Canola | extracellular | 40.06 | 49.32 |
| CDX84569 | Canola | mitochondrion | 35.36 | 48.48 |
| CDY41221 | Canola | cytosol | 43.65 | 48.32 |
| CDX78281 | Canola | cytosol | 42.54 | 48.12 |
| CDY40230 | Canola | cytosol | 24.59 | 47.85 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 42.27 | 47.81 |
| CDY35372 | Canola | cytosol | 12.43 | 45.92 |
| CDX78279 | Canola | cytosol | 48.62 | 45.71 |
| CDY41220 | Canola | cytosol | 19.61 | 44.65 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 56.91 | 44.59 |
| CDY35566 | Canola | cytosol | 16.85 | 44.53 |
| CDX73429 | Canola | mitochondrion | 14.92 | 43.9 |
| CDY40226 | Canola | cytosol | 11.88 | 41.35 |
| CDY23937 | Canola | mitochondrion | 44.2 | 41.34 |
| CDY34607 | Canola | cytosol | 16.02 | 40.85 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 12.71 | 37.1 |
| CDY01651 | Canola | mitochondrion | 33.7 | 36.09 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 25.41 | 35.94 |
| CDX74515 | Canola | cytosol | 46.13 | 35.61 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 39.78 | 33.96 |
| CDY48142 | Canola | cytosol | 18.23 | 33.5 |
| CDY52958 | Canola | cytosol | 17.96 | 32.02 |
| CDY22729 | Canola | nucleus | 19.89 | 31.58 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 27.07 | 31.51 |
| CDX73432 | Canola | extracellular, plasma membrane | 35.36 | 30.05 |
| CDY09047 | Canola | cytosol | 24.31 | 19.51 |
| CDY53464 | Canola | cytosol | 21.82 | 19.36 |
| CDY47798 | Canola | plasma membrane | 22.38 | 19.06 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 21.27 | 18.78 |
| CDY38511 | Canola | cytosol | 20.99 | 18.54 |
| CDY66257 | Canola | mitochondrion | 19.34 | 16.28 |
| CDX91627 | Canola | cytosol | 13.26 | 14.77 |
| CDY27080 | Canola | cytosol | 13.81 | 14.71 |
| CDY22940 | Canola | plasma membrane | 31.22 | 13.36 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078JM21 | EnsemblPlants:CDY67485 | ProteinID:CDY67485 | ProteinID:CDY67485.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00063662001 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFAM:PF08387 |
| PFscan:PS50181 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EDDF7A | : | : | : | : |
Description
BnaCnng55230DBnaCnng55230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM21]
Coordinates
chrLK036165:-:247..1650
Molecular Weight (calculated)
41813.1 Da
IEP (calculated)
6.777
GRAVY (calculated)
0.010
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKVSRLPDE LLEKVLTFLP TKEAVSTSIL SKRWEHLWMW LPKLEYDDQH YSESERKRLR CFIVRSLPLH KAHVIESLRL KLSNSHYFKP QVIKWIVATA
101: VSRNVLELDI SCSSYPEKLN ILPSNLYTSK SLVILKLGDW ILLDVPPMVS LPSLKTLQLQ EYGIDGLVIK TPSLKYFKLR VHSSSSHYCL VEHMPNLIEA
201: YIDVEFPNIK SLIESITSVK RLEICLEVLY EEGIVFSQLE HLKLCRCKDC TSNLLVRLLK DSPNLRVLDL YEMIDHYYCG IIPWNPPSTV PACMLSSLQI
301: FHWSAFSGVP GERDLAIYML KNASHLKTAT IWSDECDIPE LEMLKELAFS SRASTTCEFM FD
101: VSRNVLELDI SCSSYPEKLN ILPSNLYTSK SLVILKLGDW ILLDVPPMVS LPSLKTLQLQ EYGIDGLVIK TPSLKYFKLR VHSSSSHYCL VEHMPNLIEA
201: YIDVEFPNIK SLIESITSVK RLEICLEVLY EEGIVFSQLE HLKLCRCKDC TSNLLVRLLK DSPNLRVLDL YEMIDHYYCG IIPWNPPSTV PACMLSSLQI
301: FHWSAFSGVP GERDLAIYML KNASHLKTAT IWSDECDIPE LEMLKELAFS SRASTTCEFM FD
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.