CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007169.1-P	Field mustard	extracellular	70.71	98.34
CDY41221	Canola	cytosol	68.33	87.77
CDX73431	Canola	endoplasmic reticulum, plasma membrane	68.33	68.99
CDY41224	Canola	cytosol, plasma membrane	67.14	68.28
CDX78281	Canola	cytosol	51.67	67.81
CDX73430	Canola	extracellular, vacuole	66.9	67.71
CDY72604	Canola	extracellular	47.38	67.69
CDX78283	Canola	extracellular, plasma membrane	65.95	66.75
CDX96200	Canola	extracellular, plasma membrane	65.95	66.75
CDX73428	Canola	cytosol, extracellular, plasma membrane	50.24	65.94
CDY40228	Canola	cytosol, extracellular, nucleus	19.29	65.32
CDY41220	Canola	cytosol	24.29	64.15
CDY41219	Canola	cytosol	25.71	63.91
CDX78279	Canola	cytosol	58.57	63.9
CDY40225	Canola	endoplasmic reticulum, extracellular	58.57	62.92
CDY40230	Canola	cytosol	27.62	62.37
AT3G54910.2	Thale cress	cytosol	53.1	59.79
CDY67485	Canola	cytosol	50.0	58.01
CDY17463	Canola	cytosol	40.71	57.38
CDY32785	Canola	cytosol	50.24	57.18
CDX79668	Canola	cytosol	47.62	56.66
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	61.67	56.06
CDX84569	Canola	mitochondrion	35.24	56.06
CDY40226	Canola	cytosol	13.57	54.81
CDX73429	Canola	mitochondrion	15.0	51.22
CDX84780	Canola	cytosol	21.9	50.55
CDY23937	Canola	mitochondrion	44.05	47.8
CDX73432	Canola	extracellular, plasma membrane	42.14	41.55
CDX74515	Canola	cytosol	45.24	40.51
CDY48142	Canola	cytosol	18.81	40.1
CDY16725	Canola	cytosol, extracellular, nucleus	23.81	39.06
CDY52958	Canola	cytosol	18.81	38.92
CDY01651	Canola	mitochondrion	31.19	38.76
CDY35566	Canola	cytosol	12.62	38.69
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	38.57	38.21
CDY64738	Canola	extracellular, nucleus, peroxisome	27.86	37.62
CDY34607	Canola	cytosol	11.9	35.21
CDY35372	Canola	cytosol	7.14	30.61
CDY22729	Canola	nucleus	15.24	28.07
CDY09047	Canola	cytosol	18.33	17.07
CDY47798	Canola	plasma membrane	17.14	16.94
CDY55715	Canola	cytosol, nucleus, plasma membrane	15.95	16.34
CDY53464	Canola	cytosol	15.71	16.18
CDY38511	Canola	cytosol	14.76	15.12
CDY66257	Canola	mitochondrion	14.76	14.42
CDY22940	Canola	plasma membrane	28.81	14.3
CDX91627	Canola	cytosol	9.29	12.0
CDY27080	Canola	cytosol	9.52	11.76

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HRA4	EnsemblPlants:CDY40231	ProteinID:CDY40231	ProteinID:CDY40231.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00069381001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EE52BB	:	:	:	:

Description

BnaA09g35130DBnaA09g35130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRA4]

Coordinates

chrLK032466:+:183182..184604

Molecular Weight (calculated)

47928.5 Da

IEP (calculated)

5.293

GRAVY (calculated)

0.108

Length

420 amino acids

Sequence
(BLAST)

001: MDRISELPDE LLVKILMSVP TKVAVSTSIL SKRWEYLWMW LTKLEYLHRD HCSEPGCKRL QSFLDRNLPL HRAPVIETFR LELCSSHFKP ENISTWVSTA
101: VSHCLRELDI LHDDTEPAMS NILPSNLFTC KSLVVLKLVG EILLDVPRVV SLPSLKTLKI QSVRYFDEET LQRLLSNCPI LEDLVVDLRD YDYESAGQLT
201: VAVPSLQSLS LYIPYCQDLD GFVIETPNLK SFKLLDHSIS GHYCLIEKMP CLIEAYLEVN LPDMKSLIGS ITSVKRLTIC SEGIMMLGEG FVFNQLEHLE
301: VCFCTLFSSD LVIELLLKAS SNLKRLGFSF MEHHVPQGMV HWNQPTIVPE CILSSLESFS WSKYTGEPEE RDIVVYILKH ALHLKTATIN SYGSDVWKLE
401: MLKELELSPR ASATCQLLFD

Best Arabidopsis Sequence Match ( AT4G10400.2 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.