Factsheet for AT5G38565.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G38580.1	Thale cress	cytosol	24.93	51.79
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	53.01	48.81
CDX84780	Canola	cytosol	24.93	47.8
AT5G38590.2	Thale cress	cytosol	52.15	44.39
CDY23937	Canola	mitochondrion	46.99	42.38
Bra028194.1-P	Field mustard	cytosol	35.53	42.18
AT4G10400.1	Thale cress	cytosol	46.7	39.85
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	35.53	38.51
CDY01651	Canola	mitochondrion	36.68	37.87
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	32.95	36.39
AT3G54910.2	Thale cress	cytosol	38.4	35.92
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	26.93	35.74
CDX74515	Canola	cytosol	46.7	34.75
AT4G15075.1	Thale cress	cytosol	13.75	28.57
AT5G56700.2	Thale cress	cytosol	19.48	18.89
AT2G26860.2	Thale cress	cytosol	19.48	16.79
AT5G60610.1	Thale cress	cytosol	16.62	14.95
AT5G11370.1	Thale cress	cytosol, extracellular	12.61	14.15
AT4G00315.1	Thale cress	cytosol	17.77	14.06
AT5G56690.1	Thale cress	endoplasmic reticulum	16.05	13.93
AT5G62970.1	Thale cress	cytosol	17.77	13.81
AT1G55660.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	19.2	13.62
AT1G19410.1	Thale cress	cytosol	16.62	13.33
AT5G56410.1	Thale cress	cytosol	17.77	12.33
AT4G15060.1	Thale cress	cytosol	14.9	9.65

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:833845	EMBL:AB005231	ProteinID:AED94335.1	EMBL:AK226797
ArrayExpress:AT5G38565	EnsemblPlantsGene:AT5G38565	RefSeq:AT5G38565	TAIR:AT5G38565	RefSeq:AT5G38565-TAIR-G	EnsemblPlants:AT5G38565.1
TAIR:AT5G38565.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	RefSeq:NP_680365.2
PFAM:PF00646	PFAM:PF08387	PO:PO:0000293	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	UniProt:Q3E8L3
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00005DC2DE	:	:

Description

Probable FBD-associated F-box protein At5g38565 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8L3]

Coordinates

chr5:-:15444310..15446297

Molecular Weight (calculated)

40078.0 Da

IEP (calculated)

6.575

GRAVY (calculated)

0.016

Length

349 amino acids

Sequence
(BLAST)

001: MDIFNGLPDD VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LPRLDFGSPK TDLLAFLNTC QYDKEEEVGL VDFIDKKLPL HRAPFLAMYV CWKFLMNVGM
101: KTYFHVRHLE TRQREGKSLQ DILSICPVLD DLSVICSVHQ DVKEFTIIVP SLQSLTLFIE NCEVFDGYVI DTPLKYLKLE DVHEEEHYCL LKKMPKLREA
201: YVDVQLDDLK SLIGSITSVK RLNHMFREKS KILGQLLKDS PNLRVLNIFK VQGHVTLSTG VDCWNQPISV PECLLESLQI FNLSHYFGKQ QDLDFVVYIL
301: KNACHLKTAT ILADEPEHLV PNLKELTLSP RASSTCQLSI RCGLGSERS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.