Factsheet for AT5G60610.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56700.2	Thale cress	cytosol	51.8	55.83
AT2G26860.2	Thale cress	cytosol	54.9	52.59
CDY34607	Canola	cytosol	18.81	51.41
AT5G56690.1	Thale cress	endoplasmic reticulum	51.03	49.25
AT5G62970.1	Thale cress	cytosol	46.13	39.87
AT4G00315.1	Thale cress	cytosol	45.1	39.68
CDY66257	Canola	mitochondrion	42.01	37.91
AT1G55660.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	45.62	35.98
AT1G19410.1	Thale cress	cytosol	39.18	34.94
AT5G56410.1	Thale cress	cytosol	44.85	34.59
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	40.72	32.38
AT4G15075.1	Thale cress	cytosol	13.14	30.36
AT5G11370.1	Thale cress	cytosol, extracellular	23.2	28.94
AT4G15060.1	Thale cress	cytosol	39.95	28.76
AT5G38580.1	Thale cress	cytosol	12.37	28.57
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	16.24	19.57
AT3G54910.2	Thale cress	cytosol	18.04	18.77
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	17.27	17.68
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	11.6	17.11
AT5G38590.2	Thale cress	cytosol	18.04	17.07
AT4G10400.1	Thale cress	cytosol	17.53	16.63
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	14.95	16.62
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	9.54	11.71

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:836182	UniProt:A0A178URD5	ProteinID:AED97356.1	ProteinID:ANM69005.1
ArrayExpress:AT5G60610	EnsemblPlantsGene:AT5G60610	RefSeq:AT5G60610	TAIR:AT5G60610	RefSeq:AT5G60610-TAIR-G	EnsemblPlants:AT5G60610.1
TAIR:AT5G60610.1	EMBL:AY085261	Unigene:At.29151	ProteinID:BAB09834.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	RefSeq:NP_001330715.1	RefSeq:NP_200869.1	ProteinID:OAO95522.1
PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PO:PO:0000084	PO:PO:0001078	PO:PO:0004507
PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009046	PO:PO:0025022
PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	UniProt:Q9FF58	SMART:SM00256
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000AB070	:	:	:

Description

FBD-associated F-box protein At5g60610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF58]

Coordinates

chr5:+:24363591..24365615

Molecular Weight (calculated)

44955.8 Da

IEP (calculated)

5.856

GRAVY (calculated)

-0.019

Length

388 amino acids

Sequence
(BLAST)

001: MDRISGLPDE LLVKIISFVP TKVAVSTSIL SKRWESLWKW VPKLECDCTE PALRDFILKN LPLQARIIES LYLRFRRESF LFQDIKLWGG IAISHCLREL
101: RIDFFSHYAN PYVILPRSLY TCKSLVTLKL LGLGIRVDVP RDVCLPSLKT LLLQCVAYSE EDPLRLLLSC CPVLEDLVIE LDDANQNVKA LVVIVPTLQC
201: LSLKIPASCS DERYLIVTPS LKYFKVEDDR EIFNALIENM PELEEADIYV TQHIETLLES VTSVKRLTLR QLYNSIDEYK CRAGIVFKQL EQLELSICSD
301: NWTKLVIWLL QNSPNLRVLN LDADSDYERY EEYEQDNWKN IQRSVPKCLK SSLKTLEFAG YTARPEERDF LSFIFKKARC LKTSSISH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.