Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031323_P001 | Maize | extracellular | 85.63 | 87.95 |
| Os08t0500000-01 | Rice | plasma membrane | 82.7 | 85.71 |
| TraesCS7A01G241300.1 | Wheat | plastid | 80.06 | 81.01 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 79.77 | 80.71 |
| HORVU7Hr1G049190.1 | Barley | plastid | 79.47 | 80.42 |
| TraesCS7B01G136800.1 | Wheat | plastid | 79.18 | 80.12 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 70.67 | 77.99 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 71.26 | 76.66 |
| CDY32798 | Canola | plastid | 70.09 | 76.11 |
| PGSC0003DMT400029338 | Potato | plastid | 68.92 | 75.56 |
| Bra002827.1-P | Field mustard | plastid | 69.21 | 75.16 |
| AT5G56280.1 | Thale cress | plastid | 69.79 | 75.08 |
| CDY49389 | Canola | plastid | 69.79 | 74.84 |
| Solyc10g005660.2.1 | Tomato | plastid | 68.33 | 74.44 |
| KRH62556 | Soybean | plastid | 69.21 | 74.21 |
| AT4G26430.1 | Thale cress | plastid | 67.74 | 72.87 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 24.34 | 72.17 |
| KRH56376 | Soybean | plastid | 68.04 | 72.05 |
| CDX89337 | Canola | plastid | 66.86 | 71.7 |
| Bra026439.1-P | Field mustard | plastid | 66.86 | 71.7 |
| CDX94336 | Canola | plastid | 66.28 | 71.07 |
| CDY42737 | Canola | plastid | 65.98 | 70.75 |
| Bra019106.1-P | Field mustard | plastid | 65.4 | 70.13 |
| CDX92773 | Canola | plastid | 62.76 | 60.8 |
| Zm00001d011100_P002 | Maize | plastid | 18.18 | 21.6 |
| Zm00001d001966_P001 | Maize | cytosol | 19.35 | 20.69 |
| Zm00001d035752_P002 | Maize | plastid | 18.18 | 20.33 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 19.65 | 20.24 |
Protein Annotations
| EntrezGene:100283126 | MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | UniProt:A0A1D6QKF2 | ProteinID:AQK58202.1 | GO:GO:0000338 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | InterPro:MPN_CSN6 | PFAM:PF01398 |
| PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 |
| UniParc:UPI000844EA74 | EnsemblPlantsGene:Zm00001d052848 | EnsemblPlants:Zm00001d052848_P004 | EnsemblPlants:Zm00001d052848_T004 | SEG:seg | : |
Description
COP9 signalosome complex subunit 6a
Coordinates
chr4:+:202462929..202466761
Molecular Weight (calculated)
37227.5 Da
IEP (calculated)
6.584
GRAVY (calculated)
-0.089
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPSDAAAA SAAPAPAPTT AAASSSGGFT FKLHPLVIVN VSDHHTRVKA QAACSADSSS PSSGPGAGQP PRVFGCVIGV QRGRTVEIFN SFELVLDPVS
101: GTLDRAFLEK KQELYKKVFP DFYVLGWYST GSDVHDTDMQ IHKALMDVNE SPVYLLLNPT INLSQKDLPV TIYESELHVI DGCPQLIFVR SNYTIETVEA
201: ERISVDHVAH LKPSDGGSAA TQLAAHLTGI HSAIKMLNSR VRVIHQYLVA MQKVQSLLFT AGDIPMDNSL LRQVSSLVRR LPATESQKFQ DDFLMEYNDT
301: LLMTYLAMFT NCSSTMNELV EKINTSYERP TTRRGGRGAF M
101: GTLDRAFLEK KQELYKKVFP DFYVLGWYST GSDVHDTDMQ IHKALMDVNE SPVYLLLNPT INLSQKDLPV TIYESELHVI DGCPQLIFVR SNYTIETVEA
201: ERISVDHVAH LKPSDGGSAA TQLAAHLTGI HSAIKMLNSR VRVIHQYLVA MQKVQSLLFT AGDIPMDNSL LRQVSSLVRR LPATESQKFQ DDFLMEYNDT
301: LLMTYLAMFT NCSSTMNELV EKINTSYERP TTRRGGRGAF M
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Arabidopsis Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.