Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G319400.2 | Wheat | mitochondrion, nucleus | 96.94 | 96.94 |
| TraesCS7D01G315900.1 | Wheat | mitochondrion, nucleus | 96.51 | 95.26 |
| HORVU7Hr1G076310.14 | Barley | mitochondrion, nucleus | 94.76 | 94.35 |
| EES13239 | Sorghum | mitochondrion, nucleus | 86.03 | 88.74 |
| Os08t0112700-01 | Rice | nucleus | 86.03 | 88.74 |
| Zm00001d035053_P002 | Maize | nucleus | 61.14 | 71.43 |
| Zm00001d049692_P001 | Maize | nucleus | 71.62 | 62.36 |
| GSMUA_Achr11P... | Banana | nucleus | 58.52 | 59.82 |
| TraesCS2B01G328000.1 | Wheat | nucleus | 51.09 | 57.92 |
| GSMUA_Achr7P02960_001 | Banana | nucleus | 55.46 | 53.59 |
| TraesCS1B01G467500.1 | Wheat | nucleus | 2.62 | 6.12 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF152 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS7B01G220200 | EnsemblPlants:TraesCS7B01G220200.1 | TIGR:cd00265 | : |
Description
No Description!
Coordinates
chr7B:-:411493607..411495695
Molecular Weight (calculated)
25798.5 Da
IEP (calculated)
7.031
GRAVY (calculated)
-0.232
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYDLATT GTMDGLIERY KSASGEGVAA DGCGDQRVDP KQEAMVLKQE
101: IDLLQKGLRY IYGNRANEHM NVDELNALER YLEIWMFNIR SAKMQIMIQE IQALKSKILY MQEGMLKAAN EILQEKIVEQ HGLIDVGMTI ADQQNGHFST
201: VPLLEEITNP LTILSGYSTC RGSEMGYSF
101: IDLLQKGLRY IYGNRANEHM NVDELNALER YLEIWMFNIR SAKMQIMIQE IQALKSKILY MQEGMLKAAN EILQEKIVEQ HGLIDVGMTI ADQQNGHFST
201: VPLLEEITNP LTILSGYSTC RGSEMGYSF
001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
Arabidopsis Description
AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.