Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g080100.2.1 | Tomato | nucleus | 93.3 | 93.3 |
| PGSC0003DMT400026576 | Potato | nucleus | 50.89 | 53.27 |
| PGSC0003DMT400000028 | Potato | nucleus | 50.0 | 50.0 |
| PGSC0003DMT400062319 | Potato | nucleus | 25.45 | 47.9 |
| PGSC0003DMT400065060 | Potato | nucleus | 23.21 | 46.85 |
| PGSC0003DMT400000030 | Potato | nucleus | 24.11 | 45.76 |
| PGSC0003DMT400062322 | Potato | nucleus | 24.11 | 42.52 |
Protein Annotations
| EntrezGene:102599642 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M1C2V7 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG400022748 | PGSC:PGSC0003DMG400022748 | EnsemblPlants:PGSC0003DMT400058560 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002962081 | RefSeq:XP_006358849.1 | SEG:seg |
Description
MADS box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022748]
Coordinates
chr8:-:53768699..53776641
Molecular Weight (calculated)
25898.4 Da
IEP (calculated)
9.921
GRAVY (calculated)
-0.688
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTELKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS STTKTIERYQ KNDKSLGRLN RKLTDQLTTE HLKEEVATMT
101: RKLEFLEDSK RKLLGHGLES STLDELQQVE EQLEKSLSNI RARKNLLFKE QIAQLKEEEK ILLKKNADLR KRCEVLPLTL TPFPQVEKDV ERQIMEVETE
201: LFIGRPETRK NSYCPNLNTP PTSL
101: RKLEFLEDSK RKLLGHGLES STLDELQQVE EQLEKSLSNI RARKNLLFKE QIAQLKEEEK ILLKKNADLR KRCEVLPLTL TPFPQVEKDV ERQIMEVETE
201: LFIGRPETRK NSYCPNLNTP PTSL
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN
Arabidopsis Description
AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.