Factsheet for Solyc10g083920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	97.15	97.15
Solyc09g008400.2.1	Tomato	nucleus	82.11	81.95
KRH67758	Soybean	plastid	74.39	77.87
KRG96039	Soybean	cytosol, plastid	73.78	77.73
Bra029801.1-P	Field mustard	cytosol, plastid	74.39	75.31
CDY54611	Canola	cytosol	74.8	75.1
KRH32554	Soybean	cytosol	73.98	74.9
CDY41574	Canola	cytosol	74.19	74.8
KRH19952	Soybean	cytosol	73.37	74.74
VIT_08s0007g04850.t01	Wine grape	cytosol	76.22	74.7
Bra001296.1-P	Field mustard	cytosol, plastid	73.98	74.44
CDX73997	Canola	cytosol, plastid	73.58	74.03
CDY07942	Canola	cytosol, plastid	73.17	73.32
AT3G09880.1	Thale cress	cytosol, plastid	74.19	73.15
AT5G03470.1	Thale cress	cytosol	72.15	71.72
CDY04885	Canola	cytosol, plastid	66.46	67.84
CDY44370	Canola	cytosol, plastid	65.85	67.08
Bra028832.1-P	Field mustard	cytosol, plastid	65.65	67.01
Solyc05g055530.2.1	Tomato	cytosol	27.03	61.57
Solyc05g014340.2.1	Tomato	cytosol	58.74	57.57
Solyc02g067980.2.1	Tomato	nucleus	60.98	57.25
Solyc02g093800.2.1	Tomato	plastid	59.76	56.21
CDY08231	Canola	mitochondrion	37.6	54.9
Bra031075.1-P	Field mustard	mitochondrion	33.74	52.53
CDY67412	Canola	mitochondrion	33.94	51.54
Solyc06g065690.2.1	Tomato	cytosol, plastid	52.03	51.41
CDY35507	Canola	golgi	29.88	48.51
Solyc12g006920.1.1	Tomato	plastid	48.98	47.63
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	34.96	38.91

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4D3H8
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371
EnsemblPlantsGene:Solyc10g083920.1	EnsemblPlants:Solyc10g083920.1.1	UniParc:UPI000276A0C1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:63623850..63629850

Molecular Weight (calculated)

56944.7 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.300

Length

492 amino acids

Sequence
(BLAST)

001: MLKNIIKRGH KKVLKSEVSD FGHAPPAGGR NSGNVSTSDV VVNHASRGNM VTNSIQSQQT PSVMTSAAPA SGNIENLPLF RDVQISERQV LFFRKLQICC
101: FQFDFTDTMK LVREKEIKRH TLVELVDYVQ SGAGKISESN QEEMVKMISV NIFRCLPPAS HENTGSENVE QEEDEPCLEP SWPHLQLVYE LLLRYVVSSD
201: TDTKLAKRFI DHSFVLKLLD LFDSEDPRER EYLKTILHRV YGKFMVHRPF IRKGINNIFY RFIYETERHS GIGELLEILG SIINGFALPM KEEHKLFLVR
301: ALIPLHKPKS VAMYHQQLSY CIVQFVEKDY KLSDTVIRGL LKYWPVTNCQ KEVLFLQELE EVLETTQAAE FQRCMVPLFR QIARCLNSPH FQVAERALFL
401: WNNEHIVGLI AQNRNVIFPI IFDALQKNID NHWNQAIHGL TVNVRKMFME MDADLFDECQ RQYSEKAARA TELEEQRELR WQRLAAAATQ GR

Best Arabidopsis Sequence Match ( AT5G03470.1 )
(BLAST)

001: MFKKIMKGAN RKASKAEAND SSMYGFDPPG RSGPGSNMIV NHASRGSLVP SSPNSMAAAT TQPPPMYSVE PLPLFRDVSV SERQSLFLRK LQICCFQFDF
101: TDTLKNAREK EIKRQTLLEL VDFIQSGAGK LTEVCQEEMV KMISVNIFRC LPPASHENTG QEPADLEEEE PYLEPSWPHL QLIYELLLRY IVPSDTDTKV
201: AKRYIDHSFV LRLLELFETE DPREREYLKT ILHRIYGKFM VHRPFIRKAM NHIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRALIPL
301: HKPKPIAMYH QQLSYCIVQF VEKDYKLADT VIRGLLKFWP VTNCTKEVLF LGELEEVLEA TQTVEFQRCM VPLFQQIARC LSSSNFQVAE RALFLWNNEH
401: VVGLIAQNRG VILPIIFASL EKNIESHWNQ AVHGLSANIK RMFMEMDPEL FEECQQQYEE KQAKSKQVEE QRQNRWRRLD EAVEERERED PMITS

Arabidopsis Description

B'ALPHAATB' ALPHA [Source:UniProtKB/TrEMBL;Acc:A0A178UNX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.