CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08228
CDY24050
CDY26125
CDY33064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47310.1	CDY08228	AT1G55190.1	21798944
AT5G47310.1	CDY24050	AT1G55190.1	21798944
AT5G47310.1	CDY26125	AT1G55190.1	21798944
AT5G47310.1	CDY33064	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024951.1-P	Field mustard	cytosol	100.0	100.0
CDX77757	Canola	cytosol	98.77	98.77
AT5G47310.1	Thale cress	cytosol	91.77	91.02
CDY27921	Canola	cytosol	67.08	73.42
CDX76571	Canola	cytosol	67.9	73.01
CDX90471	Canola	cytosol	64.2	72.9
CDY09624	Canola	cytosol	64.2	72.56
PGSC0003DMT400067477	Potato	cytosol	60.91	66.97
Solyc08g078220.2.1	Tomato	cytosol	60.91	66.97
KRH28159	Soybean	cytosol	61.73	66.96
KRH77327	Soybean	cytosol	59.67	64.73
GSMUA_Achr4P30040_001	Banana	mitochondrion	58.44	63.39
KRH04183	Soybean	cytosol	57.61	62.78
KRH57475	Soybean	cytosol	57.2	62.33
GSMUA_AchrUn_...	Banana	cytosol	54.73	61.86
EES11216	Sorghum	cytosol	51.44	60.1
Zm00001d026190_P001	Maize	cytosol	51.44	60.1
Zm00001d002758_P002	Maize	cytosol	51.03	59.33
TraesCS6D01G225900.1	Wheat	cytosol	49.79	59.02
TraesCS6A01G243700.2	Wheat	cytosol	49.38	58.82
TraesCS6B01G280600.1	Wheat	cytosol	48.97	58.05
Zm00001d017468_P001	Maize	cytosol	49.79	57.89
EES07522	Sorghum	cytosol	49.38	57.42
Os02t0655500-01	Rice	cytosol	47.33	56.37
Os04t0548000-01	Rice	cytosol	47.74	56.04
TraesCS2A01G416700.1	Wheat	cytosol	46.5	54.07
TraesCS2B01G435700.2	Wheat	cytosol	46.09	53.85
TraesCS2D01G413700.1	Wheat	cytosol	46.5	53.05
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	50.21	52.59
TraesCS4B01G376300.2	Wheat	vacuole	50.62	51.9
EER95706	Sorghum	mitochondrion	49.79	51.71
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	51.03	51.67
Os03t0100900-01	Rice	plastid	51.85	51.43
GSMUA_Achr1P00440_001	Banana	mitochondrion	55.56	49.27
HORVU2Hr1G098080.1	Barley	peroxisome	46.5	43.3
CDY65539	Canola	cytosol, mitochondrion	38.68	42.73
CDY65538	Canola	cytosol, mitochondrion	38.68	42.73
CDX88162	Canola	cytosol, mitochondrion	38.68	42.73
CDY07077	Canola	cytosol, mitochondrion	38.27	42.27
CDY05475	Canola	mitochondrion	37.45	42.13
CDY05376	Canola	cytosol, mitochondrion	36.63	41.2
Zm00001d027266_P001	Maize	mitochondrion, plastid	49.79	40.74
CDX75209	Canola	nucleus	37.86	40.0
CDY39951	Canola	cytosol	37.45	39.91
CDX87334	Canola	cytosol	37.45	39.22
CDX76766	Canola	nucleus	37.45	38.56
CDY10616	Canola	cytosol, nucleus, peroxisome	39.51	38.25
CDY62507	Canola	nucleus, plasma membrane	37.86	38.17
CDX67961	Canola	cytosol	35.8	38.16
CDY35370	Canola	nucleus, plasma membrane	38.27	37.8
CDX79359	Canola	cytosol	35.39	37.72
CDY17812	Canola	nucleus	42.39	36.65
CDY17002	Canola	nucleus	41.98	36.3
CDY25677	Canola	nucleus	39.92	36.06
GSMUA_Achr5P12520_001	Banana	plastid	52.67	35.07
CDY23657	Canola	nucleus	39.51	34.29
CDX68806	Canola	nucleus	38.27	30.0
CDY49480	Canola	cytosol	22.22	21.34
CDY66007	Canola	cytosol	21.81	20.87
CDX89402	Canola	cytosol	21.4	20.72
CDX94426	Canola	cytosol	21.4	20.63
CDX94429	Canola	cytosol	20.58	20.41
CDX89404	Canola	cytosol	20.16	20.0
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	37.04	16.42

Protein Annotations

EnsemblPlants:CDY64684	EnsemblPlantsGene:GSBRNA2T00042548001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A03	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35	PFAM:PF05903
ProteinID:CDY64684	ProteinID:CDY64684.1	SMART:SM01179	UniParc:UPI000253FA98	UniProt:A0A078JDG4	MapMan:19.4.1.7

Description

BnaA06g40140DBnaA06g40140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDG4]

Coordinates

chrLK034521:-:12515..14516

Molecular Weight (calculated)

27010.5 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.362

Length

243 amino acids

Sequence
(BLAST)

001: MRVLGLSSSL CSTDEKEVEE MVGDSSSLTP VYLNVYDLTP VNNYLYWFGL GIFHSGIEAH GFEYGYGAHE YSSSGVFEVE PRNCPGFIFR RSVLLGTTSM
101: SPSDFRSFME KLSRKYHGDT YHLIAKNCNH FTEEVCLQVT GKPIPGWINR MARVGSFCNC ILPESIQLST VGQPEALEFS DDNDGSEESV ASSLSDETDG
201: EGQDHHLITA PNSDIAYLQD RPVRLARELL QEPSDGSPML KRS

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.