Factsheet for TraesCS2D01G413700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G255800.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G266900.1
TraesCS2D01G345400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25680.1	21798944
AT5G47310.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3D01G106500.1	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G416700.1	Wheat	cytosol	97.65	99.52
TraesCS2B01G435700.2	Wheat	cytosol	94.84	97.12
EES11216	Sorghum	cytosol	77.0	78.85
Zm00001d026190_P001	Maize	cytosol	75.59	77.4
Zm00001d002758_P002	Maize	cytosol	74.18	75.6
Os04t0548000-01	Rice	cytosol	72.77	74.88
HORVU2Hr1G098080.1	Barley	peroxisome	90.61	73.95
TraesCS6D01G225900.1	Wheat	cytosol	64.32	66.83
GSMUA_AchrUn_...	Banana	cytosol	57.28	56.74
GSMUA_Achr4P30040_001	Banana	mitochondrion	58.69	55.8
PGSC0003DMT400067477	Potato	cytosol	53.05	51.13
KRH04183	Soybean	cytosol	53.52	51.12
Solyc08g078220.2.1	Tomato	cytosol	52.58	50.68
TraesCS7D01G365100.1	Wheat	cytosol	48.36	50.0
KRH57475	Soybean	cytosol	51.64	49.33
KRH28159	Soybean	cytosol	51.64	49.11
KRH77327	Soybean	cytosol	51.64	49.11
CDX90471	Canola	cytosol	48.83	48.6
CDY09624	Canola	cytosol	48.83	48.37
Bra012661.1-P	Field mustard	cytosol	48.36	48.13
AT4G17486.1	Thale cress	cytosol	50.23	47.77
CDY27921	Canola	cytosol	49.77	47.75
CDY64684	Canola	cytosol	53.05	46.5
CDX77757	Canola	cytosol	53.05	46.5
Bra024951.1-P	Field mustard	cytosol	53.05	46.5
CDX76571	Canola	cytosol	49.3	46.46
AT5G47310.1	Thale cress	cytosol	53.05	46.12
GSMUA_Achr1P00440_001	Banana	mitochondrion	58.22	45.26
TraesCS4D01G261500.1	Wheat	mitochondrion	43.66	37.5
GSMUA_Achr5P12520_001	Banana	plastid	55.4	32.33
TraesCS7D01G147600.1	Wheat	plastid	34.27	28.52
TraesCS1D01G192400.1	Wheat	cytosol, peroxisome, plastid	24.41	18.51
TraesCS7D01G016100.1	Wheat	nucleus	25.82	16.92

Protein Annotations

EnsemblPlants:TraesCS2D01G413700.1	EnsemblPlantsGene:TraesCS2D01G413700	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35
PFAM:PF05903	SEG:seg	SMART:SM01179	MapMan:19.4.1.7	:	:

Description

No Description!

Coordinates

chr2D:-:528082207..528084485

Molecular Weight (calculated)

23043.1 Da

IEP (calculated)

6.067

GRAVY (calculated)

-0.168

Length

213 amino acids

Sequence
(BLAST)

001: MAAQNGGGGG AGAGAAVVLN VYDLTPINDY LYWFGLGIFH SGIEVHGLEY AFGAHDLSTS GVFEVEPKCC PGYVYRRSVW MGTTEMSRAE FRSFIQTLAG
101: KYNGNTYHLI SKNCNHFTDD VCKNITKKPA PGWVNRLARV GYFFNRLLPK SIQVSTVTHG ATHPAFSDDD VDSSGSSLNG DSDMDDLDQH LLPAAGTDLQ
201: SIVVSPKLSK DLV

Best Arabidopsis Sequence Match ( AT1G47740.2 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.