CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER97813
EES00126
EES05123
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	EES05123	AT1G27300.1	21798944
AT4G17486.1	EER97813	AT2G39760.1	21798944
AT4G17486.1	EER87703	AT4G25660.1	21798944
AT4G17486.1	EER87703	AT4G25680.1	21798944
AT5G47310.1	EES00126	AT1G55190.1	21798944
AT5G47310.1	OQU77594	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026190_P001	Maize	cytosol	95.19	95.19
Zm00001d002758_P002	Maize	cytosol	92.31	91.87
Os04t0548000-01	Rice	cytosol	79.33	79.71
TraesCS2A01G416700.1	Wheat	cytosol	77.4	77.03
TraesCS2D01G413700.1	Wheat	cytosol	78.85	77.0
TraesCS2B01G435700.2	Wheat	cytosol	75.96	75.96
EES07522	Sorghum	cytosol	71.63	71.29
GSMUA_AchrUn_...	Banana	cytosol	65.38	63.26
GSMUA_Achr4P30040_001	Banana	mitochondrion	67.31	62.5
HORVU2Hr1G098080.1	Barley	peroxisome	74.52	59.39
KRH04183	Soybean	cytosol	62.5	58.3
PGSC0003DMT400067477	Potato	cytosol	61.06	57.47
Solyc08g078220.2.1	Tomato	cytosol	60.58	57.01
KRH57475	Soybean	cytosol	60.58	56.5
KRH77327	Soybean	cytosol	60.58	56.25
KRH28159	Soybean	cytosol	60.1	55.8
EER95706	Sorghum	mitochondrion	62.02	55.13
CDX90471	Canola	cytosol	54.33	52.8
CDY09624	Canola	cytosol	54.33	52.56
Bra012661.1-P	Field mustard	cytosol	53.85	52.34
CDX77757	Canola	cytosol	61.06	52.26
AT5G47310.1	Thale cress	cytosol	61.54	52.24
GSMUA_Achr1P00440_001	Banana	mitochondrion	68.27	51.82
AT4G17486.1	Thale cress	cytosol	55.77	51.79
Bra024951.1-P	Field mustard	cytosol	60.1	51.44
CDY64684	Canola	cytosol	60.1	51.44
CDY27921	Canola	cytosol	54.81	51.35
EER89945	Sorghum	cytosol	51.92	51.18
CDX76571	Canola	cytosol	53.85	49.56
KXG39054	Sorghum	plastid	48.56	40.73
EER95329	Sorghum	mitochondrion	49.04	40.48
GSMUA_Achr5P12520_001	Banana	plastid	65.87	37.53
KXG19474	Sorghum	plastid	38.46	30.53
EER94588	Sorghum	cytosol	25.96	22.04
EER87703	Sorghum	cytosol	24.52	19.03

Protein Annotations

EnsemblPlants:EES11216	EnsemblPlantsGene:SORBI_3006G168400	EntrezGene:8083353	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:EES11216	ProteinID:EES11216.1	RefSeq:XP_002446888.1	SEG:seg
SMART:SM01179	unigene:Sbi.6340	UniParc:UPI0001A86F8E	UniProt:C5YDF2	MapMan:19.4.1.7	:

Description

hypothetical protein

Coordinates

chr6:+:52580468..52583499

Molecular Weight (calculated)

23034.1 Da

IEP (calculated)

5.217

GRAVY (calculated)

-0.227

Length

208 amino acids

Sequence
(BLAST)

001: MEAQNGAGGG APVVLNVYDL TPMNNYLYWF GLGIFHSGIE VHGMEYGFGA HEFPTSGVFE VEPKSCPGFI YRRSVWMGTT DMSRAEFRSF IENLAGKYNG
101: NTYHLISKNC NHFTDDVCKN LTRKSIPGWV NRLARVGSFF NCLLPEGIQV STVRHVPTHP AFSDDDMDSV SSSIIGDSDL EELDQHLLPS TTDAHSIDVP
201: PKLAKDLL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.