Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G416700.1 | Wheat | cytosol | 73.56 | 91.87 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 73.95 | 90.61 |
| TraesCS2B01G435700.2 | Wheat | cytosol | 71.65 | 89.9 |
| EES11216 | Sorghum | cytosol | 59.39 | 74.52 |
| Zm00001d026190_P001 | Maize | cytosol | 58.62 | 73.56 |
| Os04t0548000-01 | Rice | cytosol | 57.85 | 72.95 |
| Zm00001d002758_P002 | Maize | cytosol | 58.24 | 72.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.98 | 55.81 |
| GSMUA_Achr4P30040_001 | Banana | mitochondrion | 47.13 | 54.91 |
| PGSC0003DMT400067477 | Potato | cytosol | 43.68 | 51.58 |
| Solyc08g078220.2.1 | Tomato | cytosol | 43.68 | 51.58 |
| KRH04183 | Soybean | cytosol | 43.3 | 50.67 |
| CDX90471 | Canola | cytosol | 40.61 | 49.53 |
| CDY09624 | Canola | cytosol | 40.61 | 49.3 |
| Bra012661.1-P | Field mustard | cytosol | 40.23 | 49.07 |
| KRH57475 | Soybean | cytosol | 41.76 | 48.88 |
| AT4G17486.1 | Thale cress | cytosol | 41.38 | 48.21 |
| KRH77327 | Soybean | cytosol | 41.38 | 48.21 |
| KRH28159 | Soybean | cytosol | 41.38 | 48.21 |
| CDY27921 | Canola | cytosol | 41.0 | 48.2 |
| CDX76571 | Canola | cytosol | 40.61 | 46.9 |
| HORVU0Hr1G009550.1 | Barley | cytosol, peroxisome, plasma membrane | 42.91 | 46.67 |
| Bra024951.1-P | Field mustard | cytosol | 43.3 | 46.5 |
| CDX77757 | Canola | cytosol | 43.3 | 46.5 |
| CDY64684 | Canola | cytosol | 43.3 | 46.5 |
| AT5G47310.1 | Thale cress | cytosol | 42.91 | 45.71 |
| GSMUA_Achr1P00440_001 | Banana | mitochondrion | 47.13 | 44.89 |
| GSMUA_Achr5P12520_001 | Banana | plastid | 45.59 | 32.6 |
| HORVU7Hr1G029950.1 | Barley | plastid | 27.2 | 28.86 |
| HORVU4Hr1G070620.3 | Barley | cytosol, nucleus, plastid | 34.1 | 26.97 |
| HORVU1Hr1G049510.1 | Barley | cytosol | 12.26 | 23.88 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 16.48 | 21.83 |
| HORVU1Hr1G049520.3 | Barley | cytosol, peroxisome, plastid | 19.92 | 21.4 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G098080.1 | EnsemblPlantsGene:HORVU2Hr1G098080 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | ncoils:Coil | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF35 | PFAM:PF05903 | SEG:seg | SMART:SM01179 | UniParc:UPI000B470F2E | UniProt:A0A287J3J1 |
| MapMan:19.4.1.7 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:681920291..681923347
Molecular Weight (calculated)
23192.3 Da
IEP (calculated)
6.071
GRAVY (calculated)
-0.123
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR GVRMAAQDGG GGAAVVLNVY DLTPINDYLY WFGLGVFHSG IEVHGLEYAF
101: GAHDLSISGV FEVEPKCCPG YVYRRSVWMG TTEMSRAEFR SFIETLAGKY NGNTYHLISK NCNHFTDDVC KNITKKPAPG WVNRLARVGY FFNRLLPKSI
201: QVSTLSHGAT HPAISDDDVE STCSSLSGDS DVDDLDQHLL PAAGIDLQSV NVSPKLSKDL V
101: GAHDLSISGV FEVEPKCCPG YVYRRSVWMG TTEMSRAEFR SFIETLAGKY NGNTYHLISK NCNHFTDDVC KNITKKPAPG WVNRLARVGY FFNRLLPKSI
201: QVSTLSHGAT HPAISDDDVE STCSSLSGDS DVDDLDQHLL PAAGIDLQSV NVSPKLSKDL V
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Arabidopsis Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.