Factsheet for Os04t0548000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os02t0509600-01
Os05t0200280-01
Os06t0107000-01
Os07t0101400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	Os02t0509600-01	AT1G27300.1	21798944
AT4G17486.1	Os07t0101400-01	AT2G39760.1	21798944
AT4G17486.1	Os06t0107000-01	AT4G25660.1	21798944
AT4G17486.1	Os06t0107000-01	AT4G25680.1	21798944
AT5G47310.1	Os01t0196500-01	AT1G55190.1	21798944
AT5G47310.1	Os05t0200280-01	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11216	Sorghum	cytosol	79.71	79.33
Zm00001d026190_P001	Maize	cytosol	77.29	76.92
Zm00001d002758_P002	Maize	cytosol	76.33	75.6
TraesCS2A01G416700.1	Wheat	cytosol	74.88	74.16
TraesCS2D01G413700.1	Wheat	cytosol	74.88	72.77
TraesCS2B01G435700.2	Wheat	cytosol	72.95	72.6
Os02t0655500-01	Rice	cytosol	64.25	65.2
GSMUA_AchrUn_...	Banana	cytosol	61.84	59.53
HORVU2Hr1G098080.1	Barley	peroxisome	72.95	57.85
GSMUA_Achr4P30040_001	Banana	mitochondrion	61.35	56.7
KRH04183	Soybean	cytosol	59.42	55.16
PGSC0003DMT400067477	Potato	cytosol	57.49	53.85
KRH28159	Soybean	cytosol	57.97	53.57
KRH77327	Soybean	cytosol	57.97	53.57
Solyc08g078220.2.1	Tomato	cytosol	57.0	53.39
KRH57475	Soybean	cytosol	57.49	53.36
AT4G17486.1	Thale cress	cytosol	55.07	50.89
CDY27921	Canola	cytosol	54.11	50.45
Os03t0100900-01	Rice	plastid	59.42	50.2
CDX90471	Canola	cytosol	51.69	50.0
CDY09624	Canola	cytosol	51.69	49.77
Bra012661.1-P	Field mustard	cytosol	51.21	49.53
Os06t0560400-01	Rice	cytosol	51.21	49.07
CDX76571	Canola	cytosol	53.14	48.67
CDX77757	Canola	cytosol	56.52	48.15
CDY64684	Canola	cytosol	56.04	47.74
Bra024951.1-P	Field mustard	cytosol	56.04	47.74
GSMUA_Achr1P00440_001	Banana	mitochondrion	62.32	47.08
AT5G47310.1	Thale cress	cytosol	55.56	46.94
Os03t0198500-01	Rice	mitochondrion	46.38	38.87
GSMUA_Achr5P12520_001	Banana	plastid	59.42	33.7
Os06t0182100-00	Rice	plastid	36.23	28.63
Os10t0533900-01	Rice	cytosol, nucleus, peroxisome	25.6	21.54
Os06t0107000-01	Rice	cytosol, nucleus	25.6	19.63

Protein Annotations

EMBL:AK073099	EMBL:AK104979	EnsemblPlants:Os04t0548000-01	EnsemblPlantsGene:Os04g0548000	EntrezGene:4336575	Gene3D:3.90.1720.30
InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:BAF15391.1	ProteinID:BAS90352.1
RefSeq:XP_015633703.1	SEG:seg	SMART:SM01179	UniParc:UPI00001B205E	UniProt:Q0JB96	MapMan:19.4.1.7

Description

Protein of unknown function DUF862, eukaryotic domain containing protein. (Os04t0548000-01)

Coordinates

chr4:+:27426756..27429823

Molecular Weight (calculated)

22713.5 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.296

Length

207 amino acids

Sequence
(BLAST)

001: MAVQNGGGDG SGSGAASVVV NVYDLTPMNN YLYWFGLGIF HSGIEVHGVE YGFGAHEFPT SGVFEVEPKN CPGFVYRRSV RMGTTGMSRA EFRSFIEKLT
101: GKYNGNSYHL ISKNCNHFTD DVSKNLTGKP IPGWVNRLAR VGSFFNYLLP KSIQVSAVRH VPTHPAFSDD DMDSRSCSIS GDSDVDELDQ HLLSATTIEL
201: HSIEHQS

Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)

001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP

Arabidopsis Description

DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.