Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr7P09070_001 | |
| GSMUA_Achr7P10650_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P30040_001 | Banana | mitochondrion | 81.86 | 78.57 |
| EES11216 | Sorghum | cytosol | 63.26 | 65.38 |
| PGSC0003DMT400067477 | Potato | cytosol | 66.51 | 64.71 |
| Solyc08g078220.2.1 | Tomato | cytosol | 66.05 | 64.25 |
| Zm00001d026190_P001 | Maize | cytosol | 60.93 | 62.98 |
| Zm00001d002758_P002 | Maize | cytosol | 60.47 | 62.2 |
| Os04t0548000-01 | Rice | cytosol | 59.53 | 61.84 |
| Os02t0655500-01 | Rice | cytosol | 58.6 | 61.76 |
| GSMUA_Achr1P00440_001 | Banana | mitochondrion | 77.67 | 60.95 |
| KRH28159 | Soybean | cytosol | 62.79 | 60.27 |
| KRH04183 | Soybean | cytosol | 62.33 | 60.09 |
| KRH77327 | Soybean | cytosol | 61.86 | 59.38 |
| EES07522 | Sorghum | cytosol | 57.67 | 59.33 |
| TraesCS6A01G243700.2 | Wheat | cytosol | 56.28 | 59.31 |
| TraesCS6B01G280600.1 | Wheat | cytosol | 56.28 | 59.02 |
| TraesCS6D01G225900.1 | Wheat | cytosol | 56.28 | 59.02 |
| Zm00001d017468_P001 | Maize | cytosol | 56.74 | 58.37 |
| TraesCS2A01G416700.1 | Wheat | cytosol | 56.74 | 58.37 |
| KRH57475 | Soybean | cytosol | 60.0 | 57.85 |
| CDX90471 | Canola | cytosol | 57.21 | 57.48 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 56.74 | 57.28 |
| TraesCS2B01G435700.2 | Wheat | cytosol | 55.35 | 57.21 |
| CDY09624 | Canola | cytosol | 56.74 | 56.74 |
| Bra012661.1-P | Field mustard | cytosol | 56.28 | 56.54 |
| EER95706 | Sorghum | mitochondrion | 60.93 | 55.98 |
| CDX77757 | Canola | cytosol | 62.33 | 55.14 |
| AT4G17486.1 | Thale cress | cytosol | 57.21 | 54.91 |
| CDY64684 | Canola | cytosol | 61.86 | 54.73 |
| Bra024951.1-P | Field mustard | cytosol | 61.86 | 54.73 |
| GSMUA_Achr5P06500_001 | Banana | cytosol, extracellular, peroxisome | 54.42 | 54.42 |
| CDY27921 | Canola | cytosol | 55.81 | 54.05 |
| TraesCS5A01G543200.2 | Wheat | cytosol, peroxisome, vacuole | 58.14 | 53.88 |
| CDX76571 | Canola | cytosol | 56.28 | 53.54 |
| AT5G47310.1 | Thale cress | cytosol | 60.93 | 53.47 |
| HORVU0Hr1G009550.1 | Barley | cytosol, peroxisome, plasma membrane | 59.53 | 53.33 |
| TraesCS4B01G376300.2 | Wheat | vacuole | 58.6 | 53.16 |
| Os03t0100900-01 | Rice | plastid | 60.47 | 53.06 |
| GSMUA_Achr2P19400_001 | Banana | plastid | 51.63 | 51.15 |
| GSMUA_Achr7P25980_001 | Banana | mitochondrion | 44.65 | 46.15 |
| HORVU2Hr1G098080.1 | Barley | peroxisome | 55.81 | 45.98 |
| GSMUA_Achr5P12520_001 | Banana | plastid | 76.28 | 44.93 |
| GSMUA_Achr4P14060_001 | Banana | cytosol, plastid, vacuole | 34.42 | 44.85 |
| Zm00001d027266_P001 | Maize | mitochondrion, plastid | 60.93 | 44.11 |
| GSMUA_Achr4P01900_001 | Banana | mitochondrion | 43.72 | 41.59 |
| GSMUA_Achr4P07180_001 | Banana | cytosol, nucleus, peroxisome | 44.19 | 41.3 |
| GSMUA_Achr3P04560_001 | Banana | mitochondrion | 41.86 | 39.65 |
| GSMUA_Achr1P22650_001 | Banana | mitochondrion, nucleus, plasma membrane | 46.05 | 38.37 |
| GSMUA_Achr11P... | Banana | mitochondrion | 43.72 | 29.65 |
| GSMUA_Achr11P... | Banana | cytosol | 21.4 | 22.55 |
| GSMUA_Achr11P... | Banana | cytosol | 25.58 | 22.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.12 | 21.77 |
| GSMUA_Achr8P12230_001 | Banana | cytosol | 24.65 | 21.54 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP06110_001 | EnsemblPlants:GSMUA_AchrUn_randomT06110_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG06110_001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF35 | PFAM:PF05903 | SEG:seg | SMART:SM01179 | UniParc:UPI0002959AA6 | UniProt:M0U6S2 |
| MapMan:19.4.1.7 | : | : | : | : | : |
Description
UPF0326 protein At4g17486 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06110_001]
Coordinates
chrchrUn_random:+:25894198..25898315
Molecular Weight (calculated)
23909.1 Da
IEP (calculated)
5.850
GRAVY (calculated)
-0.307
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMGMGNGGG DGSGRTHVYL NVYDLTPVNN YLYWFGLGVF HSGIEVHGME YGFGAHDYPT SGVFEVEPKS CPGFIFRRSV WLGTTDMSHS EFRLFIEDVA
101: GKYHGDMYHL IIKNCNHFTD EVSRHITGKP IPGWVNRLAR LGSFFNCILP ENIQVTAVGQ LPLHPAYSED GSDSCASSFV EASEEEDADH HLLKKTNSDF
201: AHANDKTLRL GRDVM
101: GKYHGDMYHL IIKNCNHFTD EVSRHITGKP IPGWVNRLAR LGSFFNCILP ENIQVTAVGQ LPLHPAYSED GSDSCASSFV EASEEEDADH HLLKKTNSDF
201: AHANDKTLRL GRDVM
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Arabidopsis Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.