Factsheet for Zm00001d017468_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007888_P002
Zm00001d016570_P001
Zm00001d037747_P001
Zm00001d039455_P002
Zm00001d045580_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT4G17486.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT4G17486.1	Zm00001d007888_P002	AT2G39760.1	21798944
AT4G17486.1	Zm00001d045580_P001	AT4G25660.1	21798944
AT4G17486.1	Zm00001d045580_P001	AT4G25680.1	21798944
AT5G47310.1	Zm00001d037747_P001	AT1G55190.1	21798944
AT5G47310.1	Zm00001d039455_P002	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07522	Sorghum	cytosol	94.26	94.26
Os02t0655500-01	Rice	cytosol	80.86	82.84
TraesCS6D01G225900.1	Wheat	cytosol	78.47	80.0
TraesCS6B01G280600.1	Wheat	cytosol	77.51	79.02
TraesCS6A01G243700.2	Wheat	cytosol	76.56	78.43
Zm00001d002758_P002	Maize	cytosol	67.94	67.94
Zm00001d026190_P001	Maize	cytosol	67.46	67.79
GSMUA_Achr4P30040_001	Banana	mitochondrion	63.16	58.93
GSMUA_AchrUn_...	Banana	cytosol	58.37	56.74
KRH04183	Soybean	cytosol	57.89	54.26
KRH28159	Soybean	cytosol	57.89	54.02
KRH57475	Soybean	cytosol	57.42	53.81
KRH77327	Soybean	cytosol	57.42	53.57
CDX90471	Canola	cytosol	52.63	51.4
Zm00001d046249_P001	Maize	cytosol	51.67	51.18
Solyc08g078220.2.1	Tomato	cytosol	54.07	51.13
PGSC0003DMT400067477	Potato	cytosol	54.07	51.13
Bra012661.1-P	Field mustard	cytosol	52.15	50.93
CDY09624	Canola	cytosol	52.15	50.7
CDY64684	Canola	cytosol	57.89	49.79
Bra024951.1-P	Field mustard	cytosol	57.89	49.79
CDX77757	Canola	cytosol	57.89	49.79
AT4G17486.1	Thale cress	cytosol	53.11	49.55
CDY27921	Canola	cytosol	51.67	48.65
AT5G47310.1	Thale cress	cytosol	56.94	48.57
CDX76571	Canola	cytosol	51.67	47.79
GSMUA_Achr1P00440_001	Banana	mitochondrion	61.24	46.72
Zm00001d028130_P001	Maize	mitochondrion	47.37	39.6
Zm00001d048173_P001	Maize	mitochondrion	46.41	38.34
Zm00001d027266_P001	Maize	mitochondrion, plastid	54.07	38.05
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	45.45	36.54
GSMUA_Achr5P12520_001	Banana	plastid	59.81	34.25
Zm00001d045118_P001	Maize	plastid	33.97	29.34
Zm00001d029725_P001	Maize	extracellular, mitochondrion	23.92	20.41
Zm00001d045580_P001	Maize	cytosol	21.53	16.79

Protein Annotations

EMBL:BT087306	EMBL:EU960938	EnsemblPlants:Zm00001d017468_P001	EnsemblPlants:Zm00001d017468_T001	EnsemblPlantsGene:Zm00001d017468	EntrezGene:100282449
Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF14	PFAM:PF05903	ProteinID:AQK73216.1
SEG:seg	SMART:SM01179	UniParc:UPI000182C878	UniProt:B6T7H3	MapMan:19.4.1.7	:

Description

DeSI-like protein

Coordinates

chr5:+:196756823..196759479

Molecular Weight (calculated)

23200.0 Da

IEP (calculated)

4.669

GRAVY (calculated)

-0.356

Length

209 amino acids

Sequence
(BLAST)

001: MGARNSAAAT PVLLNVYDLT AANDYLYWLG FGVFHSGIEV HGTEYGFGAH DYPSSGVFEV ESKSCPGFIY RRTVWLGTTD MSQEEFRSFI EKLAGDYHGD
101: TYHLINKNCN HFTDDVCQNL TGKPIPSWVN RLARVGSVFD CLLPESVQVS PVGRVPTSRR ISDDDLYSIH SPMADKDDND EDEAKHLLPA PSNDQLSVDV
201: PPKLAKDLL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.