Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G280600.1 | Wheat | cytosol | 98.54 | 98.54 |
| TraesCS6A01G243700.2 | Wheat | cytosol | 97.07 | 97.55 |
| Os02t0655500-01 | Rice | cytosol | 83.41 | 83.82 |
| EES07522 | Sorghum | cytosol | 81.46 | 79.9 |
| Zm00001d017468_P001 | Maize | cytosol | 80.0 | 78.47 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 66.83 | 64.32 |
| GSMUA_Achr4P30040_001 | Banana | mitochondrion | 63.41 | 58.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.02 | 56.28 |
| KRH04183 | Soybean | cytosol | 57.56 | 52.91 |
| KRH57475 | Soybean | cytosol | 57.07 | 52.47 |
| KRH77327 | Soybean | cytosol | 57.07 | 52.23 |
| Solyc08g078220.2.1 | Tomato | cytosol | 56.1 | 52.04 |
| PGSC0003DMT400067477 | Potato | cytosol | 56.1 | 52.04 |
| KRH28159 | Soybean | cytosol | 56.59 | 51.79 |
| CDX90471 | Canola | cytosol | 52.68 | 50.47 |
| CDY09624 | Canola | cytosol | 52.68 | 50.23 |
| Bra012661.1-P | Field mustard | cytosol | 52.2 | 50.0 |
| CDY64684 | Canola | cytosol | 59.02 | 49.79 |
| Bra024951.1-P | Field mustard | cytosol | 59.02 | 49.79 |
| AT5G47310.1 | Thale cress | cytosol | 59.02 | 49.39 |
| CDX77757 | Canola | cytosol | 58.54 | 49.38 |
| TraesCS7D01G365100.1 | Wheat | cytosol | 48.78 | 48.54 |
| AT4G17486.1 | Thale cress | cytosol | 52.68 | 48.21 |
| CDY27921 | Canola | cytosol | 51.71 | 47.75 |
| CDX76571 | Canola | cytosol | 50.73 | 46.02 |
| GSMUA_Achr1P00440_001 | Banana | mitochondrion | 60.49 | 45.26 |
| TraesCS4D01G261500.1 | Wheat | mitochondrion | 46.34 | 38.31 |
| GSMUA_Achr5P12520_001 | Banana | plastid | 60.98 | 34.25 |
| TraesCS7D01G147600.1 | Wheat | plastid | 38.05 | 30.47 |
| TraesCS1D01G192400.1 | Wheat | cytosol, peroxisome, plastid | 25.37 | 18.51 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 24.88 | 15.69 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G225900.1 | EnsemblPlantsGene:TraesCS6D01G225900 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF14 |
| PFAM:PF05903 | SEG:seg | SMART:SM01179 | MapMan:19.4.1.7 | : | : |
Description
No Description!
Coordinates
chr6D:+:317485264..317488382
Molecular Weight (calculated)
22551.4 Da
IEP (calculated)
4.440
GRAVY (calculated)
-0.221
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGNDGATT PVLLNVYDLT PVNDYLYWLG FGVFHSGIEV HGMEYGFGAH DFSSSGVFEV ESKCCPGFVY RKTVSLGTTD MSREDFRSFI ERLAGKYHGN
101: TYNLIAKNCN HFTDDVCRNL TGKPIPGWVN RLARVGSVFD CLLPESVQVS PVGRVPTLRP VIDDDLDSVS SSDSDEGDED KHLLEAPSTD LQPVEVPLKL
201: AKDLL
101: TYNLIAKNCN HFTDDVCRNL TGKPIPGWVN RLARVGSVFD CLLPESVQVS PVGRVPTLRP VIDDDLDSVS SSDSDEGDED KHLLEAPSTD LQPVEVPLKL
201: AKDLL
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Arabidopsis Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.