Factsheet for TraesCS6B01G280600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G255800.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G266900.1
TraesCS2D01G345400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25680.1	21798944
AT5G47310.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3D01G106500.1	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G225900.1	Wheat	cytosol	98.54	98.54
TraesCS6A01G243700.2	Wheat	cytosol	97.56	98.04
Os02t0655500-01	Rice	cytosol	82.44	82.84
EES07522	Sorghum	cytosol	80.49	78.95
Zm00001d017468_P001	Maize	cytosol	79.02	77.51
TraesCS2B01G435700.2	Wheat	cytosol	63.9	62.98
GSMUA_Achr4P30040_001	Banana	mitochondrion	62.93	57.59
GSMUA_AchrUn_...	Banana	cytosol	59.02	56.28
KRH04183	Soybean	cytosol	57.56	52.91
KRH57475	Soybean	cytosol	57.07	52.47
KRH77327	Soybean	cytosol	57.07	52.23
Solyc08g078220.2.1	Tomato	cytosol	56.1	52.04
PGSC0003DMT400067477	Potato	cytosol	56.1	52.04
KRH28159	Soybean	cytosol	56.59	51.79
CDX90471	Canola	cytosol	53.17	50.93
CDY09624	Canola	cytosol	53.17	50.7
Bra012661.1-P	Field mustard	cytosol	52.68	50.47
AT5G47310.1	Thale cress	cytosol	59.02	49.39
CDX77757	Canola	cytosol	58.54	49.38
Bra024951.1-P	Field mustard	cytosol	58.05	48.97
CDY64684	Canola	cytosol	58.05	48.97
TraesCS7B01G270200.1	Wheat	cytosol	48.78	48.54
AT4G17486.1	Thale cress	cytosol	51.71	47.32
CDY27921	Canola	cytosol	51.22	47.3
CDX76571	Canola	cytosol	50.24	45.58
TraesCS4B01G376300.2	Wheat	vacuole	52.2	45.15
GSMUA_Achr1P00440_001	Banana	mitochondrion	60.0	44.89
TraesCS4B01G261700.1	Wheat	mitochondrion	45.85	37.9
GSMUA_Achr5P12520_001	Banana	plastid	60.49	33.97
TraesCS7B01G048600.1	Wheat	plastid	38.05	30.12
TraesCS1B01G205700.1	Wheat	cytosol, peroxisome, plastid	25.37	21.49

Protein Annotations

EnsemblPlants:TraesCS6B01G280600.1	EnsemblPlantsGene:TraesCS6B01G280600	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF14
PFAM:PF05903	SEG:seg	SMART:SM01179	MapMan:19.4.1.7	:	:

Description

No Description!

Coordinates

chr6B:-:506707878..506711099

Molecular Weight (calculated)

22590.5 Da

IEP (calculated)

4.507

GRAVY (calculated)

-0.238

Length

205 amino acids

Sequence
(BLAST)

001: MEAGNDGPTT PVLLNVYDLT PVNDYLYWLG FGVFHSGIEV HGMEYGFGAH DFSSSGVFEV ESKCCPGFVY RKTVSLGTTD MSREDFRSFI ERLAGKYHGN
101: TYNLIAKNCN HFTDDVCRNL TGKPIPGWVN RLARVGSVFD CLLPESVQVS PVGRVPTLRP VIDDDLDSVS SSNSDEGDED KHLLEAPSTD LQPVEVPLKL
201: AKDLL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.