Factsheet for GSMUA_Achr11P09920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P01900_001	Banana	mitochondrion	53.0	74.34
GSMUA_Achr3P04560_001	Banana	mitochondrion	52.68	73.57
KRH44526	Soybean	mitochondrion	40.06	58.53
KRH47381	Soybean	cytosol	40.06	57.99
VIT_09s0002g08960.t01	Wine grape	plasma membrane	41.01	56.77
CDY39951	Canola	cytosol	40.69	56.58
Bra035161.1-P	Field mustard	cytosol	40.06	55.7
AT1G80690.2	Thale cress	cytosol	40.38	55.41
CDX87334	Canola	cytosol	40.06	54.74
Bra003580.1-P	Field mustard	cytosol	39.12	54.39
CDX67961	Canola	cytosol	39.12	54.39
CDX79359	Canola	cytosol	38.8	53.95
PGSC0003DMT400036630	Potato	cytosol	37.85	53.81
Solyc03g117100.2.1	Tomato	cytosol	38.17	53.78
GSMUA_Achr7P25980_001	Banana	mitochondrion	32.81	50.0
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	23.97	46.06
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	33.12	45.65
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	30.6	45.12
GSMUA_AchrUn_...	Banana	cytosol	29.65	43.72
Solyc06g068380.2.1	Tomato	cytosol	36.28	43.56
GSMUA_Achr2P19400_001	Banana	plastid	29.02	42.4
GSMUA_Achr4P30040_001	Banana	mitochondrion	29.65	41.96
Zm00001d045118_P001	Maize	plastid	31.55	41.32
Os06t0182100-00	Rice	plastid	34.07	41.22
HORVU7Hr1G029950.1	Barley	plastid	31.86	41.06
KXG19474	Sorghum	plastid	33.44	40.46
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	32.81	40.31
TraesCS7A01G146100.1	Wheat	plastid	32.18	40.16
TraesCS7D01G147600.1	Wheat	plastid	32.18	39.84
TraesCS7B01G048600.1	Wheat	plastid	32.18	39.38
PGSC0003DMT400073331	Potato	nucleus	36.91	37.03
GSMUA_Achr1P00440_001	Banana	mitochondrion	29.65	34.31
GSMUA_Achr11P...	Banana	cytosol	16.72	25.98
GSMUA_Achr5P12520_001	Banana	plastid	28.71	24.93
GSMUA_Achr11P...	Banana	cytosol	18.93	24.29
GSMUA_AchrUn_...	Banana	cytosol	18.3	23.39
GSMUA_Achr8P12230_001	Banana	cytosol	17.67	22.76

Protein Annotations

EnsemblPlants:GSMUA_Achr11P09920_001	EnsemblPlants:GSMUA_Achr11T09920_001	EnsemblPlantsGene:GSMUA_Achr11G09920_001	Gene3D:3.90.1720.30	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	SEG:seg
SMART:SM01179	TMHMM:TMhelix	UniParc:UPI000295A747	UniProt:M0RQX2	MapMan:19.4.1.7	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G09920_001]

Coordinates

chr11:+:7739267..7741003

Molecular Weight (calculated)

34911.4 Da

IEP (calculated)

9.823

GRAVY (calculated)

-0.413

Length

317 amino acids

Sequence
(BLAST)

001: MFVRGPSRKR RSGAVPVYLN VYDLTPINGY AYWLGLGVYH SGVQAHGVEY AYGAHEHPTT GIFEGEPRQC PGFTFRKSIL IGRTDLGPRE VRALMEEMAA
101: EYTGDTYNLV SKNCNHFCDE ACLRLTGKPI PKWVNRLAKI GYLCNCVLPV QVASVRQRAT DEGKSGSRGG GVENERRTLR SNSTTNSFAT SAASSSDDPP
201: TRISQPVVTI SSRSAASRSR RPSSSGGGIS STLTHSCAKL HHFPLLQHNK LKHSSTTIFA SSIFLAVSIL FLFKGEMEKK KTACKQWIVL QVCEKSDTGY
301: HPFWSEDRSK SERVNGA

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.