Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G25170.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT5G25170.1 | CDY36943 | AT3G47620.1 | 21798944 |
| AT5G25170.1 | CDY63061 | AT4G00150.1 | 21798944 |
| AT5G25170.1 | CDY63062 | AT4G00150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65538 | Canola | cytosol, mitochondrion | 100.0 | 100.0 |
| CDX88162 | Canola | cytosol, mitochondrion | 100.0 | 100.0 |
| CDY07077 | Canola | cytosol, mitochondrion | 98.64 | 98.64 |
| Bra009823.1-P | Field mustard | cytosol, mitochondrion | 98.18 | 98.18 |
| AT5G25170.1 | Thale cress | cytosol, mitochondrion | 92.73 | 93.58 |
| CDY05475 | Canola | mitochondrion | 89.09 | 90.74 |
| CDY05376 | Canola | cytosol, mitochondrion | 88.64 | 90.28 |
| VIT_04s0008g05960.t01 | Wine grape | mitochondrion | 71.82 | 69.91 |
| KRH05264 | Soybean | cytosol, mitochondrion | 66.36 | 67.59 |
| KRH15787 | Soybean | mitochondrion | 65.0 | 66.51 |
| KRH61696 | Soybean | cytosol | 61.82 | 62.67 |
| KRH52364 | Soybean | mitochondrion | 63.64 | 62.5 |
| CDY39951 | Canola | cytosol | 60.0 | 57.89 |
| CDX79359 | Canola | cytosol | 59.09 | 57.02 |
| CDX67961 | Canola | cytosol | 59.09 | 57.02 |
| CDX87334 | Canola | cytosol | 59.55 | 56.47 |
| CDX75209 | Canola | nucleus | 57.73 | 55.22 |
| CDY35370 | Canola | nucleus, plasma membrane | 60.45 | 54.06 |
| CDY62507 | Canola | nucleus, plasma membrane | 59.09 | 53.94 |
| CDX76766 | Canola | nucleus | 57.73 | 53.81 |
| CDX90471 | Canola | cytosol | 44.09 | 45.33 |
| CDY09624 | Canola | cytosol | 43.64 | 44.65 |
| CDX68806 | Canola | nucleus | 60.45 | 42.9 |
| CDY27921 | Canola | cytosol | 42.27 | 41.89 |
| CDX76571 | Canola | cytosol | 42.73 | 41.59 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 47.27 | 41.43 |
| CDX77757 | Canola | cytosol | 43.18 | 39.09 |
| CDY64684 | Canola | cytosol | 42.73 | 38.68 |
| CDY25677 | Canola | nucleus | 47.27 | 38.66 |
| CDY17812 | Canola | nucleus | 47.73 | 37.37 |
| CDY17002 | Canola | nucleus | 47.73 | 37.37 |
| CDY23657 | Canola | nucleus | 47.27 | 37.14 |
| CDY49480 | Canola | cytosol | 29.09 | 25.3 |
| CDY66007 | Canola | cytosol | 28.64 | 24.8 |
| CDX94426 | Canola | cytosol | 27.27 | 23.81 |
| CDX94429 | Canola | cytosol | 26.36 | 23.67 |
| CDX89404 | Canola | cytosol | 26.36 | 23.67 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 57.73 | 23.18 |
| CDX89402 | Canola | cytosol | 25.91 | 22.71 |
Protein Annotations
| EnsemblPlants:CDY65539 | EnsemblPlantsGene:GSBRNA2T00046777001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MEROPS:C97.A06 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF12 | PFAM:PF05903 |
| ProteinID:CDY65538.1 | ProteinID:CDY65539 | ProteinID:CDY65539.1 | SEG:seg | SMART:SM01179 | UniParc:UPI0004EDC5D8 |
| UniProt:A0A078JD45 | MapMan:19.4.1.7 | : | : | : | : |
Description
BnaCnng47560DBnaA06g27530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD45]
Coordinates
chrLK034829:-:22570..23937
Molecular Weight (calculated)
24593.5 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.445
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRMVVVAG RKKKAGSVPV YLNVYDLTPI NGYAYWLGLG VYHSGVEVHG VEYGFGAHEH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PEKVRAFMEK
101: LSEEYSGNTY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKV PEAEEKKLGS RSSRFPPGPS LSSSGSLNRS
201: RRGGGERRRQ CLPPSPPVSA
101: LSEEYSGNTY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKV PEAEEKKLGS RSSRFPPGPS LSSSGSLNRS
201: RRGGGERRRQ CLPPSPPVSA
001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV
Arabidopsis Description
At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.