CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943
CDY63061
CDY63062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	CDY24170	AT3G47620.1	21798944
AT5G25170.1	CDY36943	AT3G47620.1	21798944
AT5G25170.1	CDY63061	AT4G00150.1	21798944
AT5G25170.1	CDY63062	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020487.1-P	Field mustard	mitochondrion	97.69	97.69
CDY05475	Canola	mitochondrion	97.69	97.69
CDY07077	Canola	cytosol, mitochondrion	90.74	89.09
AT5G25170.1	Thale cress	cytosol, mitochondrion	89.81	88.99
CDY65539	Canola	cytosol, mitochondrion	90.28	88.64
CDY65538	Canola	cytosol, mitochondrion	90.28	88.64
CDX88162	Canola	cytosol, mitochondrion	90.28	88.64
VIT_04s0008g05960.t01	Wine grape	mitochondrion	69.44	66.37
KRH05264	Soybean	cytosol, mitochondrion	65.74	65.74
KRH15787	Soybean	mitochondrion	62.96	63.26
KRH52364	Soybean	mitochondrion	62.5	60.27
KRH61696	Soybean	cytosol	60.19	59.91
CDX79359	Canola	cytosol	57.41	54.39
CDX67961	Canola	cytosol	57.41	54.39
CDY39951	Canola	cytosol	57.41	54.39
CDX87334	Canola	cytosol	56.94	53.02
CDX75209	Canola	nucleus	56.02	52.61
CDX76766	Canola	nucleus	56.94	52.12
CDY35370	Canola	nucleus, plasma membrane	59.26	52.03
CDY62507	Canola	nucleus, plasma membrane	57.87	51.87
CDX90471	Canola	cytosol	42.13	42.52
CDY09624	Canola	cytosol	42.13	42.33
CDX68806	Canola	nucleus	59.26	41.29
CDY10616	Canola	cytosol, nucleus, peroxisome	47.69	41.04
CDY27921	Canola	cytosol	40.74	39.64
CDX76571	Canola	cytosol	41.2	39.38
CDY25677	Canola	nucleus	47.69	38.29
CDX77757	Canola	cytosol	41.67	37.04
CDY17812	Canola	nucleus	48.15	37.01
CDY17002	Canola	nucleus	48.15	37.01
CDY23657	Canola	nucleus	47.69	36.79
CDY64684	Canola	cytosol	41.2	36.63
CDY49480	Canola	cytosol	28.7	24.51
CDY66007	Canola	cytosol	28.24	24.02
CDX94429	Canola	cytosol	25.93	22.86
CDX89404	Canola	cytosol	25.93	22.86
CDX94426	Canola	cytosol	26.39	22.62
CDX89402	Canola	cytosol	25.93	22.31
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	56.48	22.26

Protein Annotations

EnsemblPlants:CDY05376	EnsemblPlantsGene:GSBRNA2T00120254001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A06	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903
ProteinID:CDY05376	ProteinID:CDY05376.1	SEG:seg	SMART:SM01179	UniParc:UPI0001CAAD57	MapMan:19.4.1.7

Description

BnaC02g40840D

Coordinates

chrLK031961:-:767094..768022

Molecular Weight (calculated)

24397.6 Da

IEP (calculated)

10.224

GRAVY (calculated)

-0.391

Length

216 amino acids

Sequence
(BLAST)

001: MLCRMVVVNG RKKKPGLVPV YLNVYDLTPI NGYAYWLGLG VYHSGVEVHG VEYGFGAHEH STTGIFEVGP KQCPGFTFRK SILIGRTELD PQQVCAFLEK
101: LAEGYCGNTY HLITKNCNHF CNDVCVRLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVKKLRSRS SRFPPSSSLS SSGSLNRNRR
201: GERRRQRLPP TPPVSA

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.