Factsheet for Bra020487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 4
cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P
Bra037319.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G25170.1	Bra037319.1-P	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05475	Canola	mitochondrion	100.0	100.0
CDY05376	Canola	cytosol, mitochondrion	97.69	97.69
Bra009823.1-P	Field mustard	cytosol, mitochondrion	91.2	89.55
AT5G25170.1	Thale cress	cytosol, mitochondrion	90.28	89.45
VIT_04s0008g05960.t01	Wine grape	mitochondrion	70.83	67.7
KRH05264	Soybean	cytosol, mitochondrion	67.13	67.13
KRH15787	Soybean	mitochondrion	64.35	64.65
KRH52364	Soybean	mitochondrion	63.43	61.16
KRH61696	Soybean	cytosol	61.11	60.83
Bra003580.1-P	Field mustard	cytosol	58.33	55.26
Bra035161.1-P	Field mustard	cytosol	57.87	54.82
Bra011312.1-P	Field mustard	nucleus	57.41	53.91
Bra032034.1-P	Field mustard	nucleus, plasma membrane	61.11	53.01
Bra012661.1-P	Field mustard	cytosol	42.59	42.99
Bra014091.1-P	Field mustard	nucleus	49.07	37.72
Bra032229.1-P	Field mustard	nucleus	48.61	37.63
Bra024951.1-P	Field mustard	cytosol	42.13	37.45
Bra010452.1-P	Field mustard	cytosol	27.78	23.62
Bra013908.1-P	Field mustard	cytosol	25.93	22.86
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	57.41	22.63
Bra013910.1-P	Field mustard	cytosol	25.46	21.91

Protein Annotations

EnsemblPlants:Bra020487.1	EnsemblPlants:Bra020487.1-P	EnsemblPlantsGene:Bra020487	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A06
PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI0002547041
UniProt:M4DVE3	MapMan:19.4.1.7	:	:	:	:

Description

AT5G25170 (E=3e-096) | unknown protein

Coordinates

chrA02:-:25069775..25070630

Molecular Weight (calculated)

24495.7 Da

IEP (calculated)

9.893

GRAVY (calculated)

-0.392

Length

216 amino acids

Sequence
(BLAST)

001: MLCRMVVVNS RKKKPGLVPV YLNVYDLTPI NGYAYWLGLG VYHSGVEVHG VEYGFGAHEH STTGIFEVEP KQCPGFTFRK SILIGRTELD PQQVCAFMEK
101: LAEGYCGNTY HLITKNCNHF CNDVCVRLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVKKLRSRS SRFPPSSSLS SSGSLNRNRR
201: GERRRQCLPP TQPVSA

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.