CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH03466
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	KRH03466	AT3G47620.1	21798944
AT5G25170.1	KRH54542	AT3G47620.1	21798944
AT5G25170.1	KRH56919	AT3G47620.1	21798944
AT5G25170.1	KRH63357	AT3G47620.1	21798944
AT5G25170.1	KRG88927	AT4G00150.1	21798944
AT5G25170.1	KRH65380	AT4G00150.1	21798944
AT5G25170.1	KRH75351	AT4G00150.1	21798944
AT5G25170.1	KRH76167	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15787	Soybean	mitochondrion	95.37	95.81
KRH52364	Soybean	mitochondrion	81.48	78.57
KRH61696	Soybean	cytosol	77.31	76.96
VIT_04s0008g05960.t01	Wine grape	mitochondrion	73.61	70.35
AT5G25170.1	Thale cress	cytosol, mitochondrion	68.52	67.89
Bra009823.1-P	Field mustard	cytosol, mitochondrion	68.98	67.73
CDY07077	Canola	cytosol, mitochondrion	68.98	67.73
Bra020487.1-P	Field mustard	mitochondrion	67.13	67.13
CDY05475	Canola	mitochondrion	67.13	67.13
CDX88162	Canola	cytosol, mitochondrion	67.59	66.36
CDY65538	Canola	cytosol, mitochondrion	67.59	66.36
CDY65539	Canola	cytosol, mitochondrion	67.59	66.36
CDY05376	Canola	cytosol, mitochondrion	65.74	65.74
KRH44526	Soybean	mitochondrion	59.26	58.99
KRH47381	Soybean	cytosol	58.33	57.53
CDX76766	Canola	nucleus	61.11	55.93
AT2G25190.1	Thale cress	nucleus, vacuole	61.57	55.42
CDY35370	Canola	nucleus, plasma membrane	62.96	55.28
CDX75209	Canola	nucleus	58.8	55.22
Bra011312.1-P	Field mustard	nucleus	58.8	55.22
CDY62507	Canola	nucleus, plasma membrane	61.11	54.77
Bra032034.1-P	Field mustard	nucleus, plasma membrane	62.96	54.62
KRH38144	Soybean	mitochondrion	50.46	50.7
KRH05795	Soybean	mitochondrion	54.17	46.61
KRH15239	Soybean	mitochondrion	54.17	46.61
KRG89196	Soybean	mitochondrion	51.39	44.22
KRH28159	Soybean	cytosol	45.83	44.2
KRH57475	Soybean	cytosol	45.37	43.95
KRH77327	Soybean	cytosol	45.37	43.75
KRH04183	Soybean	cytosol	44.91	43.5
KRH49521	Soybean	mitochondrion	50.46	43.43
KRH03735	Soybean	nucleus	44.44	42.67
CDX68806	Canola	nucleus	60.65	42.26
KRH63012	Soybean	nucleus	42.13	39.57
KRH54877	Soybean	cytosol, peroxisome	34.26	39.15
KRH08874	Soybean	cytosol	30.56	26.94
KRH35244	Soybean	cytosol, peroxisome, plastid	29.17	26.25
KRH38387	Soybean	cytosol	30.09	26.21
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	63.43	25.0
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	62.96	24.82

Protein Annotations

EMBL:ACUP02010720	EnsemblPlants:KRH05264	EnsemblPlantsGene:GLYMA_17G216600	EntrezGene:100786432	Gene3D:3.90.1720.30	InterPro:PPPDE_dom
MEROPS:C97.A06	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	ProteinID:KRH05264	ProteinID:KRH05264.1
SMART:SM01179	UniParc:UPI000233E0BF	UniProt:I1MWY0	MapMan:19.4.1.7	:	:

Description

hypothetical protein

Coordinates

chr17:-:36503061..36506382

Molecular Weight (calculated)

24248.2 Da

IEP (calculated)

9.405

GRAVY (calculated)

-0.394

Length

216 amino acids

Sequence
(BLAST)

001: MLCKLVPVPR KKKPGLNPVY LNVYDLTPIN GYAYWLGLGV YHSGVQVHGV EYGFGAHERD TTGIFEVEPR HCPGFTFRKS IFIGSTDMGP KDVRAFMERL
101: AEEYSGNTYH LIQKNCNHFC EDVCVRLTGK SIPRWVNRLA RLGFLCNCVL PPSLNETKVR QVTIDRVQEG GEKKKMRSQS SRYEASPNPT LSSSQRHCLP
201: PSSVINASPS STLTVK

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.