Factsheet for Bra009823.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P
Bra037319.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G25170.1	Bra037319.1-P	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07077	Canola	cytosol, mitochondrion	99.55	99.55
CDY65539	Canola	cytosol, mitochondrion	98.18	98.18
CDY65538	Canola	cytosol, mitochondrion	98.18	98.18
CDX88162	Canola	cytosol, mitochondrion	98.18	98.18
AT5G25170.1	Thale cress	cytosol, mitochondrion	93.64	94.5
Bra020487.1-P	Field mustard	mitochondrion	89.55	91.2
VIT_04s0008g05960.t01	Wine grape	mitochondrion	72.73	70.8
KRH05264	Soybean	cytosol, mitochondrion	67.73	68.98
KRH15787	Soybean	mitochondrion	66.36	67.91
KRH61696	Soybean	cytosol	63.18	64.06
KRH52364	Soybean	mitochondrion	65.0	63.84
Bra003580.1-P	Field mustard	cytosol	59.55	57.46
Bra035161.1-P	Field mustard	cytosol	59.09	57.02
Bra011312.1-P	Field mustard	nucleus	57.27	54.78
Bra032034.1-P	Field mustard	nucleus, plasma membrane	61.36	54.22
Bra012661.1-P	Field mustard	cytosol	43.18	44.39
Bra024951.1-P	Field mustard	cytosol	42.27	38.27
Bra014091.1-P	Field mustard	nucleus	48.18	37.72
Bra032229.1-P	Field mustard	nucleus	47.73	37.63
Bra010452.1-P	Field mustard	cytosol	28.18	24.41
Bra013908.1-P	Field mustard	cytosol	26.36	23.67
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	58.64	23.54
Bra013910.1-P	Field mustard	cytosol	25.45	22.31

Protein Annotations

EnsemblPlants:Bra009823.1	EnsemblPlants:Bra009823.1-P	EnsemblPlantsGene:Bra009823	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A06
PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI000253F2DC
UniProt:M4D025	MapMan:19.4.1.7	:	:	:	:

Description

AT5G25170 (E=3e-094) | unknown protein

Coordinates

chrA06:+:17507345..17508364

Molecular Weight (calculated)

24720.7 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.463

Length

220 amino acids

Sequence
(BLAST)

001: MLCRMVVVTG RKKKAGSVPV YLNVYDLTPI NGYAYWLGLG VYHSGVEVHG VEYGFGAHEH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PEKVRAFMEK
101: LAEEYSGNTY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKV PEAEEKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGGGERRRQ CLPPSPPVTA

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.