CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY37482
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01660.1	CDY37482	AT3G13720.1	21798944
AT3G01660.1	CDY51733	AT3G13720.1	21798944
AT3G01660.1	CDY51734	AT3G13720.1	21798944
AT3G01660.1	CDY55133	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040545.1-P	Field mustard	mitochondrion	100.0	100.0
CDX77077	Canola	cytosol	98.44	98.44
AT3G01660.1	Thale cress	cytosol, mitochondrion	74.32	69.96
GSMUA_Achr9P17960_001	Banana	mitochondrion	60.31	59.39
KRG94361	Soybean	plastid	59.92	57.89
VIT_14s0066g00160.t01	Wine grape	plastid	63.42	57.39
TraesCS2D01G338500.1	Wheat	plastid	58.75	56.77
TraesCS2A01G324500.1	Wheat	plastid	58.75	56.77
Os04t0481300-01	Rice	mitochondrion	58.75	56.34
EES11004	Sorghum	plastid	59.53	56.04
TraesCS2B01G357700.1	Wheat	plastid	57.98	56.02
KRH07097	Soybean	plastid	54.09	55.6
Zm00001d003276_P001	Maize	plastid	56.42	52.16
Solyc02g093550.2.1	Tomato	plastid	57.98	52.1
PGSC0003DMT400032845	Potato	cytosol	58.37	51.72
CDY47761	Canola	cytosol	16.73	34.96
CDY30212	Canola	plastid	28.79	24.03
CDY54271	Canola	plastid	28.4	23.7

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078HKX8	UniProt:A0A078HKX8	EnsemblPlants:CDY37508	ProteinID:CDY37508
ProteinID:CDY37508.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00064123001	InterPro:Methyltransf_11	PFAM:PF08241	PANTHER:PTHR43036
PANTHER:PTHR43036:SF2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI000253EDAB	SEG:seg	:

Description

BnaA05g33730DBnaA05g33730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKX8]

Coordinates

chrLK032402:-:31939..32971

Molecular Weight (calculated)

29790.6 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.497

Length

257 amino acids

Sequence
(BLAST)

001: MDSLRFNLQQ SPFQLRPRRT IRPRITNISN QTEETDPRPP SSAGKIQRLV LNNEGRTKLN AGPDREFYSY PRFVNHVDDG FISSLTDLYR NRLRSGSIVL
101: DLMSSWELAR NPRLDYFFVK DLNEDQKLEF QDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGALIVS FSNRMFYEKA IRVWRDGTEY GRVQLVVQYF
201: QSVQGFTQPE TIRQQPPLGG GAEKPVLNWF MGLIGLASRP DPFNAVIAYK NFKPLYE

Best Arabidopsis Sequence Match ( AT3G01660.1 )
(BLAST)

001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE

Arabidopsis Description

At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.