Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G357700.1 | Wheat | plastid | 98.5 | 98.5 |
| TraesCS2A01G324500.1 | Wheat | plastid | 98.12 | 98.12 |
| Os04t0481300-01 | Rice | mitochondrion | 80.45 | 79.85 |
| EES11004 | Sorghum | plastid | 78.2 | 76.19 |
| Zm00001d003276_P001 | Maize | plastid | 77.07 | 73.74 |
| GSMUA_Achr9P17960_001 | Banana | mitochondrion | 62.03 | 63.22 |
| KRG94361 | Soybean | plastid | 62.03 | 62.03 |
| KRH07097 | Soybean | plastid | 56.02 | 59.6 |
| VIT_14s0066g00160.t01 | Wine grape | plastid | 63.53 | 59.51 |
| Bra040545.1-P | Field mustard | mitochondrion | 56.77 | 58.75 |
| CDY37508 | Canola | mitochondrion | 56.77 | 58.75 |
| CDX77077 | Canola | cytosol | 56.39 | 58.37 |
| AT3G01660.1 | Thale cress | cytosol, mitochondrion | 59.77 | 58.24 |
| PGSC0003DMT400032845 | Potato | cytosol | 59.4 | 54.48 |
| Solyc02g093550.2.1 | Tomato | plastid | 57.52 | 53.5 |
| TraesCS3D01G249400.1 | Wheat | mitochondrion | 32.33 | 28.01 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G338500.1 | EnsemblPlantsGene:TraesCS2D01G338500 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 | InterPro:Methyltransf_11 | InterPro:SAM-dependent_MTases | PANTHER:PTHR43036 |
| PANTHER:PTHR43036:SF2 | PFAM:PF08241 | SEG:seg | SUPFAM:SSF53335 | TIGR:cd02440 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:+:431968752..431969656
Molecular Weight (calculated)
30096.1 Da
IEP (calculated)
9.138
GRAVY (calculated)
-0.357
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCAPPQTLR PSRPLLPPPR CSGSAQPSPS SAGNIRRQVL QPEGRAKLDP RSDRDFYAFP RLVKHVDDGF LATLTDLYRE RLRPESDVLD LMSSWVSHLP
101: PEMRFRRVVG HGLNAQELAK NPRLDYFFVS DLNREQRLEL ESASFDAVLC TVSVQYLQSP EKVFAEIYRV LKPGGVCIVS FSNRMFYEKA IGAWREGSAY
201: SRVQLVTQYF QCVEGFTQPE VVRRLPPSDA GGKSGSSPLE ALMRLFGQAN SDPFYALISY RNFKPM
101: PEMRFRRVVG HGLNAQELAK NPRLDYFFVS DLNREQRLEL ESASFDAVLC TVSVQYLQSP EKVFAEIYRV LKPGGVCIVS FSNRMFYEKA IGAWREGSAY
201: SRVQLVTQYF QCVEGFTQPE VVRRLPPSDA GGKSGSSPLE ALMRLFGQAN SDPFYALISY RNFKPM
001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE
Arabidopsis Description
At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.