Factsheet for TraesCS2A01G324500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01660.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G01660.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G01660.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G01660.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G01660.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G01660.1	TraesCS3D01G106500.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G338500.1	Wheat	plastid	98.12	98.12
TraesCS2B01G357700.1	Wheat	plastid	96.62	96.62
Os04t0481300-01	Rice	mitochondrion	80.45	79.85
EES11004	Sorghum	plastid	77.44	75.46
Zm00001d003276_P001	Maize	plastid	75.94	72.66
GSMUA_Achr9P17960_001	Banana	mitochondrion	61.65	62.84
KRG94361	Soybean	plastid	61.65	61.65
VIT_14s0066g00160.t01	Wine grape	plastid	63.91	59.86
KRH07097	Soybean	plastid	55.64	59.2
Bra040545.1-P	Field mustard	mitochondrion	56.77	58.75
CDY37508	Canola	mitochondrion	56.77	58.75
CDX77077	Canola	cytosol	56.39	58.37
AT3G01660.1	Thale cress	cytosol, mitochondrion	59.4	57.88
PGSC0003DMT400032845	Potato	cytosol	59.02	54.14
Solyc02g093550.2.1	Tomato	plastid	57.14	53.15
TraesCS3A01G249400.2	Wheat	mitochondrion	32.71	28.34

Protein Annotations

EnsemblPlants:TraesCS2A01G324500.1	EnsemblPlantsGene:TraesCS2A01G324500	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases	PANTHER:PTHR43036
PANTHER:PTHR43036:SF2	PFAM:PF08241	SEG:seg	SUPFAM:SSF53335	TIGR:cd02440	MapMan:35.2

Description

No Description!

Coordinates

chr2A:-:554519891..554520807

Molecular Weight (calculated)

30100.1 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.364

Length

266 amino acids

Sequence
(BLAST)

001: MLCAPPQTLR PSRPLLPPPR CSGSAQPSPS SAGNIRRQVL QPEGRAKLDP RSDRDFYAFP RFVKHVDDGF LATLTDLYRE RLRPESDVLD LMSSWVSHLP
101: PEMRFRRVVG HGLNAQELAK NPRLDYFFVS DLNREQRLEL DSASLDAVLC TVSVQYLQSP EKVFAEIYRV LKPGGVCIMS FSNRMFYEKA IGAWREGSAY
201: SRVQLVTQYF QCVEGFTQPE VVRRLPPSDA GGKSGSSPLE ALMRLFGQAN SDPFYAVISY RNFKPM

Best Arabidopsis Sequence Match ( AT3G01660.1 )
(BLAST)

001: MDSLRFNLQQ SPFQLKPRIL RPRITNISNR IDETDPRPSS SAGRIQRLVL NNEGRTKLNA DPDREFYSYP RFVNHVDDSF ISSLTELYRN RLRPGSTVLD
101: LMSSWVSHLP EEVKYEKVVG HGLNAQELAR NPRLDYFFVK DLNEDQKFEF EDKYFDAVLC SVGVQYLQQP EKVFAEVYRV LKPGGVLIVS FSNRMFYEKA
201: IRVWRDGTEY SRIQLVVQYF QSIEGFTQPE IIRQQPGAQI SVLTRLMGFI GLASTPDPFN AVIAYKNFKP IYE

Arabidopsis Description

At3g01660 [Source:UniProtKB/TrEMBL;Acc:Q9SS89]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.