Factsheet for Os08t0338700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0408900-03
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Os05t0408900-03	AT4G15560.1	24104567
AT5G55200.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	36.33	69.75
Os09t0284400-01	Rice	mitochondrion	64.95	66.89
Zm00001d050123_P001	Maize	mitochondrion	69.77	65.36
KXG25038	Sorghum	plastid	72.67	62.95
CDY14299	Canola	mitochondrion	48.23	51.72
KRH46251	Soybean	mitochondrion	47.27	50.87
CDY17310	Canola	mitochondrion	47.59	50.68
CDX97366	Canola	mitochondrion	46.3	50.53
KRG98682	Soybean	mitochondrion	46.95	50.34
Bra002925.1-P	Field mustard	mitochondrion	46.3	49.15
CDX92796	Canola	mitochondrion	50.16	48.6
VIT_19s0090g01190.t01	Wine grape	mitochondrion	50.48	48.46
CDY19906	Canola	mitochondrion	45.34	48.29
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	46.3	48.16
PGSC0003DMT400057433	Potato	mitochondrion	45.34	47.8
Bra010427.1-P	Field mustard	mitochondrion	47.59	47.28
CDX89303	Canola	mitochondrion	48.87	46.77
AT4G26780.1	Thale cress	mitochondrion	48.55	46.18
AT5G55200.1	Thale cress	mitochondrion	43.09	44.37
KRH73804	Soybean	mitochondrion	48.23	43.48
Bra026403.1-P	Field mustard	mitochondrion	39.23	43.42
PGSC0003DMT400033475	Potato	mitochondrion	46.3	42.86
Solyc12g014470.1.1	Tomato	mitochondrion	45.98	42.69

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EntrezGene:4345316	EMBL:AK059052	EMBL:AK099022
ProteinID:BAD03205.1	ProteinID:BAD03646.1	ProteinID:BAF23500.1	ProteinID:BAT04991.1	ncoils:Coil	ProteinID:EEE68519.1
GO:GO:0000166	GO:GO:0000774	GO:GO:0001405	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0030150	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051082	GO:GO:0051087
InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151
EnsemblPlantsGene:Os08g0338700	EnsemblPlants:Os08t0338700-01	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237
PANTHER:PTHR21237:SF28	UniProt:Q6Z0G0	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0000226056	RefSeq:XP_015651037.1
SEG:seg	:	:	:	:	:

Description

Similar to Chaperone GrpE type 2. (Os08t0338700-01)

Coordinates

chr8:-:15232911..15236363

Molecular Weight (calculated)

33720.4 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.609

Length

311 amino acids

Sequence
(BLAST)

001: MAAAARLLAR ISRQGVASAA AARRQAEAAA LLGASAGRHL APPCSSIKAL PLLNQPRLYS TSTFQRFGFS SSAPQQDDKA ANKQTEDGVN KSTQSEASNE
101: TNSSPGTENA SQADTEDLDL SKEDLTKLVL EKEELLKSKD EEVKDMKDKV LRSYAEMENV IARTKRESDN AKKYAVQGFS KSLLDVADNL SRASSVVKES
201: FSKIDTSNES AEAVKLLNTL LEGVEMTEKQ LGEVFKKFGV EKFDPLNEKF DPNKHAALFQ IPDPSKPSGT VAAVVKVGYM LHDRVLRPAE VGVTEGGPIE
301: EEPEEKSDKS D

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.