CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH08874
KRH11287
KRH16140
KRH20991
KRH35244
KRH38387
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	KRH02173	AT4G15560.1	24104567
AT4G26780.1	KRH11287	AT4G15560.1	24104567
AT4G26780.1	KRH16140	AT4G15560.1	24104567
AT4G26780.1	KRH20991	AT4G15560.1	24104567
AT4G26780.1	KRH50940	AT4G15560.1	24104567
AT5G55200.1	KRH08874	AT4G25660.1	21798944
AT5G55200.1	KRH35244	AT4G25660.1	21798944
AT5G55200.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98682	Soybean	mitochondrion	92.39	92.07
CDY17310	Canola	mitochondrion	55.71	55.14
CDY14299	Canola	mitochondrion	54.67	54.48
CDX97366	Canola	mitochondrion	52.94	53.68
Bra002925.1-P	Field mustard	mitochondrion	54.33	53.58
KRH73804	Soybean	mitochondrion	63.67	53.33
CDY19906	Canola	mitochondrion	53.63	53.08
VIT_19s0090g01190.t01	Wine grape	mitochondrion	58.13	51.85
PGSC0003DMT400057433	Potato	mitochondrion	52.6	51.53
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	52.94	51.17
GSMUA_Achr5P27100_001	Banana	mitochondrion	52.6	50.84
CDX92796	Canola	mitochondrion	55.71	50.16
Bra010427.1-P	Field mustard	mitochondrion	53.98	49.84
AT5G55200.1	Thale cress	mitochondrion	51.9	49.67
EER96498	Sorghum	mitochondrion	51.9	49.18
AT4G26780.1	Thale cress	mitochondrion	55.36	48.93
CDX89303	Canola	mitochondrion	55.02	48.92
HORVU5Hr1G053680.2	Barley	mitochondrion	50.52	48.51
TraesCS5A01G176600.3	Wheat	mitochondrion	50.52	48.51
TraesCS5B01G173300.1	Wheat	mitochondrion	50.52	48.51
Os09t0284400-01	Rice	mitochondrion	50.52	48.34
TraesCS5D01G180300.1	Wheat	mitochondrion	50.17	48.17
Zm00001d005513_P001	Maize	mitochondrion	50.17	47.85
Bra026403.1-P	Field mustard	mitochondrion	46.02	47.33
Os08t0338700-01	Rice	mitochondrion	50.87	47.27
PGSC0003DMT400033475	Potato	mitochondrion	52.6	45.24
Zm00001d050123_P001	Maize	mitochondrion	50.52	43.98
Solyc12g014470.1.1	Tomato	mitochondrion	50.52	43.58
KXG25038	Sorghum	plastid	51.21	41.23

Protein Annotations

EntrezGene:100798944	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	UniProt:A0A0R0J2L9	EMBL:ACUP02005331
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G322000	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0042803
GO:GO:0050790	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012
InterPro:IPR013805	EnsemblPlants:KRH46251	ProteinID:KRH46251	ProteinID:KRH46251.1	HAMAP:MF_01151	PFAM:PF01025
PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF23	SUPFAM:SSF51064	SUPFAM:SSF58014
UniParc:UPI0002338CB5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:44076208..44079421

Molecular Weight (calculated)

32297.1 Da

IEP (calculated)

5.728

GRAVY (calculated)

-0.515

Length

289 amino acids

Sequence
(BLAST)

001: MFAYRVLSRS SATLSRSFTL FSVSRNSQPF STNLSNNFNS LLHPSPNKLI PVQTNFLNSM NPSLTSRFGF SSTASHEHAS EGAKVSDQSE QAEAADQTKE
101: SDVEIECDLS RDDLIKLVAE KEQLLKLKHK EIEKMQDKVL RTYAEMENVM DRTRREAENS KKFAIQNFAK SLLDVADNLG RASSVVKESF SKIESPEESS
201: EAAELLKTLL KGVEMTEKQL AEVLKKFGVK KFDPTNEPFD PHMHNAIFQI PDASKAPGTV GVVLKAGYML YDRVLRPAEV GVTQEVEDN

Best Arabidopsis Sequence Match ( AT5G55200.1 )
(BLAST)

001: MLVSRVLSRV SRSAGLRSSF SSVVTPKRNQ IPIVASRFHS LVHGTPNKLV AVPVSLRNHG TLDLNVLQRF GFFSSSSAEP KGNESNTEVP KTGETSENVE
101: VGKATDAEID FDDLSRDDLV KLVSEKEDLL KVQQKDIMEM KDKFLRTYAE QQNLMDRTNR NAESAKKFAV QNFATSLLDV ADNLERASSV VKESFSKIDT
201: SKDLAGATPL LKNLLEGVEM TEKQLAEVFR KAGLVKEDPL NEPFNPNRHN AVFQVPDASK PKGTIAHVLK SGYSLYDRVI RPAEVGVTCA VENQEGGKES
301: AA

Arabidopsis Description

Mge1GrpE protein homolog 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLP3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.