CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH08874
KRH11287
KRH16140
KRH20991
KRH35244
KRH38387
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	KRH02173	AT4G15560.1	24104567
AT4G26780.1	KRH11287	AT4G15560.1	24104567
AT4G26780.1	KRH16140	AT4G15560.1	24104567
AT4G26780.1	KRH20991	AT4G15560.1	24104567
AT4G26780.1	KRH50940	AT4G15560.1	24104567
AT5G55200.1	KRH08874	AT4G25660.1	21798944
AT5G55200.1	KRH35244	AT4G25660.1	21798944
AT5G55200.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98682	Soybean	mitochondrion	53.91	64.14
KRH46251	Soybean	mitochondrion	53.33	63.67
VIT_19s0090g01190.t01	Wine grape	mitochondrion	54.78	58.33
CDY14299	Canola	mitochondrion	46.67	55.52
CDX97366	Canola	mitochondrion	45.51	55.09
GSMUA_Achr5P27100_001	Banana	mitochondrion	46.96	54.18
Bra010427.1-P	Field mustard	mitochondrion	48.41	53.35
CDY17310	Canola	mitochondrion	44.93	53.08
Bra002925.1-P	Field mustard	mitochondrion	44.35	52.22
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	45.22	52.17
CDX92796	Canola	mitochondrion	48.41	52.02
AT4G26780.1	Thale cress	mitochondrion	48.99	51.68
CDY19906	Canola	mitochondrion	43.19	51.03
PGSC0003DMT400057433	Potato	mitochondrion	43.48	50.85
CDX89303	Canola	mitochondrion	47.25	50.15
AT5G55200.1	Thale cress	mitochondrion	43.77	50.0
Bra026403.1-P	Field mustard	mitochondrion	40.58	49.82
PGSC0003DMT400033475	Potato	mitochondrion	48.41	49.7
EER96498	Sorghum	mitochondrion	43.48	49.18
HORVU5Hr1G053680.2	Barley	mitochondrion	42.32	48.51
TraesCS5A01G176600.3	Wheat	mitochondrion	42.32	48.51
TraesCS5B01G173300.1	Wheat	mitochondrion	42.32	48.51
Os09t0284400-01	Rice	mitochondrion	42.32	48.34
Os08t0338700-01	Rice	mitochondrion	43.48	48.23
TraesCS5D01G180300.1	Wheat	mitochondrion	42.03	48.17
Zm00001d005513_P001	Maize	mitochondrion	42.03	47.85
Zm00001d050123_P001	Maize	mitochondrion	45.51	47.29
Solyc12g014470.1.1	Tomato	mitochondrion	45.8	47.16
KXG25038	Sorghum	plastid	46.38	44.57

Protein Annotations

EntrezGene:100803396	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	UniProt:A0A0R0L372	EMBL:ACUP02001288
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G294600	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0042803
GO:GO:0050790	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012
InterPro:IPR013805	EnsemblPlants:KRH73804	ProteinID:KRH73804	ProteinID:KRH73804.1	HAMAP:MF_01151	PFAM:PF01025
PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014
UniParc:UPI00023BC4AA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47280943..47285895

Molecular Weight (calculated)

38386.4 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.606

Length

345 amino acids

Sequence
(BLAST)

001: MFFHRVLSRV STNICRTSLL SASQTPQHLS SFANINLHSL LPHSPNKVLG ISILVNKVIP VQLNLLLPPI NSLSAPRFGF SSSASTENND KKNRNNVHNG
101: DSTNADPAKA NEEAKNNDQA RQDKPADKTE ESGSISDSQS QTVKRRRRGF KRTAFSDSDS ESECDLSRDD LIKLVAEKEE LVMLKHKEIE KMQDKVLRTY
201: AEMENVMERT RREADNSKKF ALQNFAKSLL DVADNLGRAS SVATENFSKI DTSSDSAEVV KLLKTLLQGV EMTEKQLVEV LKKFGVEKFD PTNEPFDPHR
301: HNAIFQIPDG SKPPGTVAAV LKAGYMLYDR VIRPAEVGVT HANRG

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.