Factsheet for TraesCS5B01G173300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 21043471

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G255800.1
TraesCS1B01G266500.1
TraesCS1D01G255100.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	TraesCS1A01G255800.1	AT4G15560.1	24104567
AT4G26780.1	TraesCS1B01G266500.1	AT4G15560.1	24104567
AT4G26780.1	TraesCS1D01G255100.1	AT4G15560.1	24104567
AT5G55200.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT5G55200.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT5G55200.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G176600.3	Wheat	mitochondrion	99.0	99.0
TraesCS5D01G180300.1	Wheat	mitochondrion	98.67	98.67
HORVU5Hr1G053680.2	Barley	mitochondrion	94.68	94.68
Os09t0284400-01	Rice	mitochondrion	72.76	72.52
GSMUA_AchrUn_...	Banana	cytosol	38.87	72.22
Zm00001d005513_P001	Maize	mitochondrion	71.43	70.96
EER96498	Sorghum	mitochondrion	69.44	68.52
CDY14299	Canola	mitochondrion	51.16	53.1
CDX97366	Canola	mitochondrion	48.51	51.23
KRH46251	Soybean	mitochondrion	48.51	50.52
KRG98682	Soybean	mitochondrion	48.17	50.0
CDX92796	Canola	mitochondrion	53.16	49.84
VIT_19s0090g01190.t01	Wine grape	mitochondrion	53.49	49.69
Bra010427.1-P	Field mustard	mitochondrion	51.16	49.2
CDY17310	Canola	mitochondrion	47.51	48.97
PGSC0003DMT400057433	Potato	mitochondrion	47.51	48.47
Bra002925.1-P	Field mustard	mitochondrion	47.18	48.46
CDY19906	Canola	mitochondrion	46.84	48.29
AT4G26780.1	Thale cress	mitochondrion	52.16	48.01
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	47.51	47.83
CDX89303	Canola	mitochondrion	50.5	46.77
Bra026403.1-P	Field mustard	mitochondrion	43.19	46.26
AT5G55200.1	Thale cress	mitochondrion	46.18	46.03
PGSC0003DMT400033475	Potato	mitochondrion	50.17	44.94
Solyc12g014470.1.1	Tomato	mitochondrion	48.17	43.28
KRH73804	Soybean	mitochondrion	48.51	42.32

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ncoils:Coil	GO:GO:0000166	GO:GO:0000774
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0030234	GO:GO:0042803	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head
InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071
PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	EnsemblPlantsGene:TraesCS5B01G173300	EnsemblPlants:TraesCS5B01G173300.1
TIGR:cd00446	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:318393325..318397897

Molecular Weight (calculated)

32874.5 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.568

Length

301 amino acids

Sequence
(BLAST)

001: MVAARLLARA TRQCAAAVVA SATRRPLGGV AAVAARPLAS SFGPARVPYM LNQPLRYSSN IFQRFGFSSS TPQQNDKEVH EPKDQESTAH ESNGEASKED
101: SGSPGSTEDL DLSKEDLVKL VFEKDELLTS KDEEIKDMKD KVLRSYAEME NVIARTKRES ENSKKYAVQN FSKSLLDVAD NLARASSVVK ESFSKLDTSE
201: DSSGAVPLLK TLLEGVDMTD KQLGEVFKKF GVERFDPLNE KFDPDKHFAL FQIPDPSKPS GTVASVVKVG YMLHDRVLRP AEVGVTEGGP SEEPEEKSGG
301: D

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.