Factsheet for PGSC0003DMT400033475

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	PGSC0003DMT400058821	AT4G15560.1	24104567
AT5G55200.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014470.1.1	Tomato	mitochondrion	84.52	84.78
PGSC0003DMT400057433	Potato	mitochondrion	60.12	68.47
VIT_19s0090g01190.t01	Wine grape	mitochondrion	53.87	55.86
CDY14299	Canola	mitochondrion	47.62	55.17
CDY17310	Canola	mitochondrion	47.92	55.14
GSMUA_Achr5P27100_001	Banana	mitochondrion	48.81	54.85
Bra002925.1-P	Field mustard	mitochondrion	47.62	54.61
CDX92796	Canola	mitochondrion	52.08	54.52
CDX97366	Canola	mitochondrion	46.13	54.39
AT4G26780.1	Thale cress	mitochondrion	52.08	53.52
AT5G55200.1	Thale cress	mitochondrion	47.92	53.31
CDY19906	Canola	mitochondrion	46.13	53.08
KRG98682	Soybean	mitochondrion	45.54	52.76
KRH46251	Soybean	mitochondrion	45.24	52.6
Bra010427.1-P	Field mustard	mitochondrion	48.81	52.4
CDX89303	Canola	mitochondrion	50.6	52.31
Bra026403.1-P	Field mustard	mitochondrion	43.15	51.6
HORVU5Hr1G053680.2	Barley	mitochondrion	44.94	50.17
TraesCS5A01G176600.3	Wheat	mitochondrion	44.94	50.17
TraesCS5B01G173300.1	Wheat	mitochondrion	44.94	50.17
Zm00001d005513_P001	Maize	mitochondrion	45.24	50.16
Os09t0284400-01	Rice	mitochondrion	44.94	50.0
EER96498	Sorghum	mitochondrion	45.24	49.84
TraesCS5D01G180300.1	Wheat	mitochondrion	44.64	49.83
KRH73804	Soybean	mitochondrion	49.7	48.41
Os08t0338700-01	Rice	mitochondrion	42.86	46.3
Zm00001d050123_P001	Maize	mitochondrion	44.35	44.88
KXG25038	Sorghum	plastid	46.43	43.45

Protein Annotations

EntrezGene:102589418	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ncoils:Coil	GO:GO:0000166
GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	InterPro:GrpE
InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	UniProt:M1AZ79	HAMAP:MF_01151
PFAM:PF01025	EnsemblPlantsGene:PGSC0003DMG400012858	PGSC:PGSC0003DMG400012858	EnsemblPlants:PGSC0003DMT400033475	PRINTS:PR00773	ScanProsite:PS01071
PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI000294B26C	RefSeq:XP_015163088.1
RefSeq:XP_015163089.1	SEG:seg	:	:	:	:

Description

GrpE protein homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400012858]

Coordinates

chr12:+:9468170..9471250

Molecular Weight (calculated)

37759.2 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.804

Length

336 amino acids

Sequence
(BLAST)

001: MLVSRIPSRF PKSVVAQCRS SLLLYSREQQ QQQYVPSLAS QFHSFREFKE KVTLFHESVL QRFGISSSAS PQHNEKETSQ SQSKLGSTKE NGEVNEKCEA
101: SVSADSQGQD ENDESGPDLA SNDNTNENVK RRRRRTKQAA SSDSDSDLDT EDLSRDDLVK LVAEKEELLK IKDDEFQKMK EKALRSYAEM ENVMNRTKRE
201: AENSKKFAIQ NFVKSLLDVA DNMERASSVV KESFSKIDES KDTVGAVPLL KTLLEGVEMT DKQLSEVFKK FGVGKYDPTN EEFDPNKHNA VFQVPDPKKA
301: PGMVAVCLKS GYTLHDRIIR PAEVGVTVAM ESTKAD

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.