CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	EES19518	AT4G15560.1	24104567
AT5G55200.1	EER87703	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050123_P001	Maize	mitochondrion	76.88	83.13
Os08t0338700-01	Rice	mitochondrion	62.95	72.67
GSMUA_AchrUn_...	Banana	cytosol	32.59	72.22
EER96498	Sorghum	mitochondrion	53.76	63.28
VIT_19s0090g01190.t01	Wine grape	mitochondrion	47.91	53.09
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	42.9	51.51
CDY14299	Canola	mitochondrion	41.5	51.38
KRH46251	Soybean	mitochondrion	41.23	51.21
CDX97366	Canola	mitochondrion	40.11	50.53
CDX92796	Canola	mitochondrion	45.13	50.47
KRG98682	Soybean	mitochondrion	40.67	50.34
PGSC0003DMT400057433	Potato	mitochondrion	40.95	49.83
CDX89303	Canola	mitochondrion	44.85	49.54
CDY17310	Canola	mitochondrion	40.11	49.32
Bra002925.1-P	Field mustard	mitochondrion	40.11	49.15
AT4G26780.1	Thale cress	mitochondrion	44.01	48.32
CDY19906	Canola	mitochondrion	39.0	47.95
Bra010427.1-P	Field mustard	mitochondrion	41.78	47.92
PGSC0003DMT400033475	Potato	mitochondrion	43.45	46.43
KRH73804	Soybean	mitochondrion	44.57	46.38
Bra026403.1-P	Field mustard	mitochondrion	35.65	45.55
Solyc12g014470.1.1	Tomato	mitochondrion	42.34	45.37
AT5G55200.1	Thale cress	mitochondrion	37.33	44.37

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	UniProt:A0A1B6PH89	ncoils:Coil	GO:GO:0000166
GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	InterPro:GrpE
InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	EnsemblPlants:KXG25038	ProteinID:KXG25038
ProteinID:KXG25038.1	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237
PANTHER:PTHR21237:SF28	EnsemblPlantsGene:SORBI_3007G112600	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0001C80C73	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:43562444..43570578

Molecular Weight (calculated)

39600.7 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.559

Length

359 amino acids

Sequence
(BLAST)

001: MHRFPFFPHN CFISLSSPRF RPNKMAAAAR LLTRISKRAV PSVALAGAAR RRPEAASLLG ASVLAAVEPC ASIKVIPLLN QLAPYSTSAF QRFGFSTSAP
101: QQDDKETNKH TDDGVNKSVG VSTEASSEAN NVPGTEKAQE AGSLNSVSWS NRKRRTTKRT AFSDSDSEDL DLSKEDLVKL LLEKDESLKS KDEEFKDMKD
201: KVLRSYAEME NVLARTKRES ENTKKYAIQS FSKSLLDVAD NLSRASSVVK ESFSKIDCSN NSDEAVPLLK TLLEGVEMTE KQLGEVFKKF GVQKFDPLNE
301: KFDPNRHYAF FQIPDPSKPS GTVAAVVKVG YMLHDRVLRP AEVGVTEGGP TEEPEEKSS

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.