CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	CDX90583	AT4G15560.1	24104567
AT4G26780.1	CDY09752	AT4G15560.1	24104567
AT4G26780.1	CDY52177	AT4G15560.1	24104567
AT4G26780.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14299	Canola	mitochondrion	93.68	92.07
Bra010427.1-P	Field mustard	mitochondrion	92.63	84.34
CDX92796	Canola	mitochondrion	80.0	71.03
CDX89303	Canola	mitochondrion	79.3	69.54
AT4G26780.1	Thale cress	mitochondrion	78.25	68.2
CDY19906	Canola	mitochondrion	58.95	57.53
CDY17310	Canola	mitochondrion	58.6	57.19
KRG98682	Soybean	mitochondrion	54.39	53.45
KRH46251	Soybean	mitochondrion	53.68	52.94
PGSC0003DMT400057433	Potato	mitochondrion	53.68	51.86
GSMUA_Achr5P27100_001	Banana	mitochondrion	54.39	51.84
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	54.04	51.51
EER96498	Sorghum	mitochondrion	53.68	50.16
HORVU5Hr1G053680.2	Barley	mitochondrion	51.93	49.17
TraesCS5A01G176600.3	Wheat	mitochondrion	51.58	48.84
Os09t0284400-01	Rice	mitochondrion	51.58	48.68
Zm00001d005513_P001	Maize	mitochondrion	51.58	48.51
TraesCS5B01G173300.1	Wheat	mitochondrion	51.23	48.51
TraesCS5D01G180300.1	Wheat	mitochondrion	51.23	48.51
VIT_19s0090g01190.t01	Wine grape	mitochondrion	54.39	47.84
Os08t0338700-01	Rice	mitochondrion	50.53	46.3
PGSC0003DMT400033475	Potato	mitochondrion	54.39	46.13
KRH73804	Soybean	mitochondrion	55.09	45.51
Solyc12g014470.1.1	Tomato	mitochondrion	52.28	44.48
Zm00001d050123_P001	Maize	mitochondrion	50.18	43.07
KXG25038	Sorghum	plastid	50.53	40.11

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	GO:A0A078E831	EnsemblPlants:CDX97366	ProteinID:CDX97366
ProteinID:CDX97366.1	ncoils:Coil	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0042803
GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00104463001	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012
InterPro:IPR013805	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237
PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0004EEA2B3	SEG:seg	:

Description

BnaC08g12310D

Coordinates

chrLK031899:-:59358..60834

Molecular Weight (calculated)

31511.0 Da

IEP (calculated)

5.829

GRAVY (calculated)

-0.620

Length

285 amino acids

Sequence
(BLAST)

001: MLASRILSRV SRSAGLRSSL SAAALPARNQ APIFTSRYHS LVNNFSQKLV AAQVSLDSFS LQRFSLSSTS TTPESHGKES SNTEASKTAE ANESGEEMSK
101: DDLVKLVAEK EELLSVKEEE IKQMKDKVLR TYAEMENVMD RTRRDAENTK KYAIQNFAKS LLDVADNLGR ASSVVRESFS KLDETSKDSA SGLLKTLLEG
201: VEMTEKQLAQ VFKKFGMDKY DPINEPFDPN RHNAMFQVPD ASKPEGTVAH VLKAGYTLYD RVIRPAEVGV TQGGESEENK KESDA

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.