Factsheet for Zm00001d005513_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Zm00001d038170_P001	AT4G15560.1	24104567
AT5G55200.1	Zm00001d045580_P001	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96498	Sorghum	mitochondrion	82.51	81.97
GSMUA_AchrUn_...	Banana	cytosol	39.27	73.46
TraesCS5A01G176600.3	Wheat	mitochondrion	71.29	71.76
TraesCS5D01G180300.1	Wheat	mitochondrion	70.96	71.43
TraesCS5B01G173300.1	Wheat	mitochondrion	70.96	71.43
HORVU5Hr1G053680.2	Barley	mitochondrion	69.64	70.1
Os09t0284400-01	Rice	mitochondrion	68.65	68.87
Zm00001d050123_P001	Maize	mitochondrion	60.4	55.12
CDY14299	Canola	mitochondrion	50.83	53.1
CDY17310	Canola	mitochondrion	50.49	52.4
Bra002925.1-P	Field mustard	mitochondrion	50.16	51.88
CDX97366	Canola	mitochondrion	48.51	51.58
CDY19906	Canola	mitochondrion	49.17	51.03
KRH46251	Soybean	mitochondrion	47.85	50.17
CDX92796	Canola	mitochondrion	53.14	50.16
PGSC0003DMT400057433	Potato	mitochondrion	48.51	49.83
AT5G55200.1	Thale cress	mitochondrion	49.51	49.67
VIT_19s0090g01190.t01	Wine grape	mitochondrion	52.48	49.07
KRG98682	Soybean	mitochondrion	46.86	48.97
Bra010427.1-P	Field mustard	mitochondrion	50.49	48.88
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	47.19	47.83
AT4G26780.1	Thale cress	mitochondrion	51.16	47.4
CDX89303	Canola	mitochondrion	50.16	46.77
PGSC0003DMT400033475	Potato	mitochondrion	50.16	45.24
Solyc12g014470.1.1	Tomato	mitochondrion	49.51	44.78
Bra026403.1-P	Field mustard	mitochondrion	40.59	43.77
KRH73804	Soybean	mitochondrion	47.85	42.03

Protein Annotations

EntrezGene:100272350	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	UniProt:B4FN51	EMBL:BT038539
ncoils:Coil	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790
GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805
HAMAP:MF_01151	ProteinID:ONM21374.1	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237
PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI00017B6CE9	EnsemblPlantsGene:Zm00001d005513	EnsemblPlants:Zm00001d005513_P001
EnsemblPlants:Zm00001d005513_T001	SEG:seg	:	:	:	:

Description

Co-chaperone GrpE family protein

Coordinates

chr2:-:176946884..176956922

Molecular Weight (calculated)

33149.0 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.489

Length

303 amino acids

Sequence
(BLAST)

001: MVTRRLFARL YRHCAGAAAA SSAAGRHRGA LAAAAVEQFA GSSLPVGVPN ILNHHFRYST SIFQKIGFSS VSPQQSDDEV NELKDHERAL DGSSEDCPSG
101: SIEGLDLSRD DLVKLVREKD ELLKSKDGEI KDMKDKVLRS YAEMENIIAR TKRESENSKK YAVQNFSKSL LDVADNLARA SSVVKESFSK IDTSKDSAGA
201: VPLLKTLLEG VDMTEKQLAE VFKKFGVEKF DPLNEEFDPN RHCAVFQIPD PSKPPGTVAS VVKVGYMLHD RVLRPAEVGV TATEGGAHAT EEAEKPEEKT
301: ARD

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.