Factsheet for Zm00001d050123_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 14690504
extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Zm00001d038170_P001	AT4G15560.1	24104567
AT5G55200.1	Zm00001d045580_P001	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25038	Sorghum	plastid	83.13	76.88
GSMUA_AchrUn_...	Banana	cytosol	35.24	72.22
Os08t0338700-01	Rice	mitochondrion	65.36	69.77
Zm00001d005513_P001	Maize	mitochondrion	55.12	60.4
VIT_19s0090g01190.t01	Wine grape	mitochondrion	50.3	51.54
CDY14299	Canola	mitochondrion	44.88	51.38
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	46.08	51.17
PGSC0003DMT400057433	Potato	mitochondrion	45.18	50.85
KRH46251	Soybean	mitochondrion	43.98	50.52
KRG98682	Soybean	mitochondrion	43.98	50.34
CDX97366	Canola	mitochondrion	43.07	50.18
CDX92796	Canola	mitochondrion	48.19	49.84
AT4G26780.1	Thale cress	mitochondrion	48.49	49.24
CDX89303	Canola	mitochondrion	47.89	48.92
Bra002925.1-P	Field mustard	mitochondrion	43.07	48.81
CDY17310	Canola	mitochondrion	42.77	48.63
CDY19906	Canola	mitochondrion	42.17	47.95
Bra010427.1-P	Field mustard	mitochondrion	44.58	47.28
KRH73804	Soybean	mitochondrion	47.29	45.51
PGSC0003DMT400033475	Potato	mitochondrion	44.88	44.35
Bra026403.1-P	Field mustard	mitochondrion	37.35	44.13
AT5G55200.1	Thale cress	mitochondrion	39.46	43.38
Solyc12g014470.1.1	Tomato	mitochondrion	43.67	43.28

Protein Annotations

EntrezGene:100272696	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ProteinID:AQK51971.1	ncoils:Coil
GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087
InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	UniProt:K7U372
HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28
SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0002212242	EnsemblPlantsGene:Zm00001d050123	EnsemblPlants:Zm00001d050123_P001	EnsemblPlants:Zm00001d050123_T001
SEG:seg	:	:	:	:	:

Description

GrpE protein homolog

Coordinates

chr4:-:67476538..67489450

Molecular Weight (calculated)

36168.4 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.546

Length

332 amino acids

Sequence
(BLAST)

001: MASAARLLAP ISRRGVVSVA LAGVERRRPE AASLLGAPVL ATVEACASIK VIPLSNQLAR YSTTAFQRFG FSTSAPQQDD KETNKHTDDG VNRSVGASTG
101: ASSEANNVPG TEKAQEAGSL DSISKSNRKR TAKRTAFSDS DSEDLDLSKE DLVKLLLEKD ESLKSKDEEF KDMKDKVLRS YAEMENVLAR TKRESENTKK
201: YAIQSFSKSL LDVADNLSRA SSVVKASFSK IDSSNDSDEA VTLLKTLLEG VEMTEKQLGE VFKKFGVEKF DPLNEKFDPN RHYAIFQIPD PSKPSGTVAA
301: VVKVGYMLHD RVLRPAEVGV TEGGPTEEEP EE

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.