CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	EES19518	AT4G15560.1	24104567
AT5G55200.1	EER87703	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005513_P001	Maize	mitochondrion	81.97	82.51
GSMUA_AchrUn_...	Banana	cytosol	39.02	73.46
Os09t0284400-01	Rice	mitochondrion	68.85	69.54
TraesCS5B01G173300.1	Wheat	mitochondrion	68.52	69.44
TraesCS5A01G176600.3	Wheat	mitochondrion	68.52	69.44
TraesCS5D01G180300.1	Wheat	mitochondrion	68.2	69.1
HORVU5Hr1G053680.2	Barley	mitochondrion	66.89	67.77
CDY14299	Canola	mitochondrion	52.79	55.52
KXG25038	Sorghum	plastid	63.28	53.76
CDX97366	Canola	mitochondrion	50.16	53.68
CDY17310	Canola	mitochondrion	50.82	53.08
Bra002925.1-P	Field mustard	mitochondrion	50.16	52.22
KRH46251	Soybean	mitochondrion	49.18	51.9
Bra010427.1-P	Field mustard	mitochondrion	53.11	51.76
AT5G55200.1	Thale cress	mitochondrion	50.82	51.32
CDX92796	Canola	mitochondrion	53.44	50.78
KRG98682	Soybean	mitochondrion	48.2	50.69
CDY19906	Canola	mitochondrion	48.52	50.68
VIT_19s0090g01190.t01	Wine grape	mitochondrion	53.44	50.31
PGSC0003DMT400057433	Potato	mitochondrion	47.54	49.15
AT4G26780.1	Thale cress	mitochondrion	52.46	48.93
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	46.89	47.83
CDX89303	Canola	mitochondrion	49.84	46.77
PGSC0003DMT400033475	Potato	mitochondrion	49.84	45.24
Bra026403.1-P	Field mustard	mitochondrion	41.31	44.84
Solyc12g014470.1.1	Tomato	mitochondrion	48.52	44.18
KRH73804	Soybean	mitochondrion	49.18	43.48

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EntrezGene:8063493	UniProt:C5X8B2	ncoils:Coil
EnsemblPlants:EER96498	ProteinID:EER96498	ProteinID:EER96498.1	GO:GO:0000166	GO:GO:0000774	GO:GO:0001405
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0030234	GO:GO:0042803
GO:GO:0050790	GO:GO:0051082	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head
InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071
PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	EnsemblPlantsGene:SORBI_3002G157100	SUPFAM:SSF51064	SUPFAM:SSF58014	unigene:Sbi.6041
UniParc:UPI0001A837FF	RefSeq:XP_002459977.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47739253..47743835

Molecular Weight (calculated)

33233.0 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.512

Length

305 amino acids

Sequence
(BLAST)

001: MATARLLARV SRQCAGAVAA SSAAGRHRRA PAAASVEQFA GSCLSARVPR ILNHHFRYST SIFQKFGFSS VSPQQSDNEL KDQERALDES SEDCSSGSEN
101: TSEPGIEGLD LSKDDLVKLV CEKDGLLKSK DDEIKDMKDK VLRSYAEMEN IIARTKRESE NSKKYAVQNF AKSLLDVADN LSRASSVVKE SFSKIDASKD
201: SAGAIPLLKT LLEGVDMTEK QLAEVFKKFG VEKFDPLNEK FDPNRHCAVF QIPDPSKPSG TVASVVKVGY MLHDRVLRPA EVGVTAGGAD ATEEAEQPEE
301: KTARD

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.