Factsheet for GSMUA_Achr7P02930_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69899	Canola	cytosol	66.96	24.44
GSMUA_Achr7P23620_001	Banana	cytosol	80.0	20.81
GSMUA_Achr6P18380_001	Banana	cytosol	80.87	20.81
VIT_03s0017g00490.t01	Wine grape	cytosol	65.22	20.55
GSMUA_Achr10P...	Banana	cytosol	72.17	18.61
GSMUA_Achr9P03980_001	Banana	cytosol	72.17	18.61
GSMUA_Achr10P...	Banana	cytosol	71.3	18.47
Bra006026.1-P	Field mustard	cytosol	67.83	17.77
AT5G09550.1	Thale cress	cytosol	67.83	17.53
GSMUA_Achr10P...	Banana	cytosol	67.83	17.49
CDY21587	Canola	cytosol	66.96	17.3
CDY56553	Canola	cytosol	66.96	17.3
CDX81131	Canola	cytosol	66.96	17.3
Bra009390.1-P	Field mustard	cytosol	66.96	17.3
KRH42088	Soybean	cytosol	66.09	17.08
Solyc01g105810.2.1	Tomato	cytosol, unclear	65.22	16.85
KRH49823	Soybean	cytosol, endoplasmic reticulum	65.22	16.85
CDY65664	Canola	cytosol	53.04	14.88
Bra028630.1-P	Field mustard	cytosol	65.22	12.23
CDY44805	Canola	cytosol	64.35	11.76
KRH66563	Soybean	cytosol	16.52	3.41
GSMUA_Achr6P03390_001	Banana	peroxisome	10.43	2.44
GSMUA_Achr7P02920_001	Banana	cytosol	0.87	0.98
HORVU4Hr1G059230.1	Barley	cytosol	0.0	0.0
KRH71651	Soybean	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234
GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr7G02930_001	EnsemblPlants:GSMUA_Achr7P02930_001	EnsemblPlants:GSMUA_Achr7T02930_001	InterPro:IPR036188	UniProt:M0TE83
PFAM:PF00996	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905
SUPFAM:SSF54373	UniParc:UPI000294E4CA	:	:	:	:

Description

Putative Rab GDP dissociation inhibitor alpha [Source:GMGC_GENE;Acc:GSMUA_Achr7G02930_001]

Coordinates

chr7:+:2344202..2346590

Molecular Weight (calculated)

13062.2 Da

IEP (calculated)

4.004

GRAVY (calculated)

-0.059

Length

115 amino acids

Sequence
(BLAST)

001: MSLCFNRYLF CCSYSHNVVP KWKFIAFVST EAETDHPDIE LKAGIDLLGR VDELFFDTYD GYEPVNDPSL DNCFISTSYD ATTHFESTVV DVLSMYTKIT
101: GRTFDLSIDL SAAEE

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.