Factsheet for Os01t0667600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005612_P001	Maize	cytosol	39.29	79.28
Os05t0280200-01	Rice	plasma membrane	33.04	72.55
Bra012576.1-P	Field mustard	cytosol	67.41	70.23
CDX77609	Canola	cytosol, plasma membrane	66.96	69.44
CDY39445	Canola	cytosol	66.96	69.44
Bra025060.1-P	Field mustard	cytosol	66.52	68.98
VIT_10s0003g01620.t01	Wine grape	cytosol	26.79	68.97
OQU87831	Sorghum	cytosol	26.79	59.41
CDY51631	Canola	cytosol	25.89	57.43
OQU77614	Sorghum	cytosol	25.0	53.85
Os08t0525000-01	Rice	plasma membrane	51.79	53.7
KRG93819	Soybean	cytosol	22.77	53.68
Os07t0634200-01	Rice	plasma membrane	50.45	51.36
Zm00001d020102_P001	Maize	cytosol	29.46	32.84
Zm00001d032569_P001	Maize	plastid	16.07	21.43

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4326321	EMBL:AK111561	ProteinID:BAB90506.1	ProteinID:BAF05723.1
ProteinID:BAS73590.1	ProteinID:EAZ13025.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	EnsemblPlantsGene:Os01g0667600	EnsemblPlants:Os01t0667600-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF872	UniProt:Q8RZ83	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00000A2BB8	RefSeq:XP_015615400.1	SEG:seg	:	:

Description

small GTP-binding protein OsRab11C1Similar to GTP-binding protein. (Os01t0667600-01)

Coordinates

chr1:+:27301548..27302922

Molecular Weight (calculated)

24445.7 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.182

Length

224 amino acids

Sequence
(BLAST)

001: MAAAAAAAGY RAEEEYDYLF KVVLIGDSGV GKSNLLSRFA RDEFSLETRS TIGVEFATKT VRVDDRLVKA QIWDTAGQER YRAITSAYYR GAVGALVVYD
101: VTRRITFENA ERWLKELRDH TDANIVVMLV GNKADLRHLR AVPAEDARAF AEAHGTFSME TSALEATNVE GAFTEVLAQI YRVVSRNALD IGDDPAAPPR
201: GRTIDVSAKD DAVTPVNSSG CCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.