Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G321800.1 | Wheat | cytosol | 96.36 | 97.14 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 85.83 | 95.93 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 95.55 | 95.16 |
| Os09t0527600-01 | Rice | cytosol, plasma membrane | 83.0 | 85.77 |
| Zm00001d021246_P002 | Maize | cytosol | 82.59 | 82.26 |
| EER97073 | Sorghum | cytosol | 84.62 | 81.64 |
| GSMUA_Achr3P13850_001 | Banana | cytosol | 62.35 | 65.81 |
| GSMUA_Achr9P00860_001 | Banana | cytosol | 60.73 | 65.22 |
| KRH06418 | Soybean | cytosol | 61.54 | 62.3 |
| KRH47850 | Soybean | cytosol | 61.54 | 62.04 |
| AT1G01200.1 | Thale cress | cytosol | 59.51 | 62.03 |
| PGSC0003DMT400000356 | Potato | cytosol | 58.3 | 59.75 |
| Bra033277.1-P | Field mustard | cytosol | 57.09 | 59.49 |
| CDX90017 | Canola | cytosol | 57.09 | 59.49 |
| Solyc01g096220.2.1 | Tomato | plastid | 58.3 | 59.26 |
| CDY15192 | Canola | cytosol | 56.68 | 59.07 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 57.09 | 59.0 |
| KRH68938 | Soybean | cytosol | 56.28 | 58.9 |
| KRG97215 | Soybean | cytosol | 55.87 | 58.47 |
| TraesCS1A01G131500.2 | Wheat | cytosol | 49.39 | 56.48 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 47.37 | 54.17 |
| TraesCS3A01G364100.1 | Wheat | cytosol | 47.37 | 54.17 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 47.37 | 54.17 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 47.77 | 54.13 |
| TraesCS5A01G176000.1 | Wheat | cytosol | 49.39 | 53.98 |
| TraesCS7A01G354400.1 | Wheat | golgi | 47.37 | 53.92 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 46.56 | 53.24 |
| TraesCS4A01G343500.1 | Wheat | cytosol | 46.96 | 51.56 |
| TraesCS1A01G015400.1 | Wheat | cytosol | 46.15 | 51.12 |
| TraesCS3A01G289600.1 | Wheat | cytosol | 45.34 | 50.68 |
| TraesCS5A01G485100.1 | Wheat | cytosol, golgi | 43.32 | 49.77 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0042546 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF679 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS5A01G315700 | EnsemblPlants:TraesCS5A01G315700.1 | TIGR:cd01868 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:526393791..526396666
Molecular Weight (calculated)
27230.9 Da
IEP (calculated)
5.249
GRAVY (calculated)
-0.403
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRGKEEEE EAAAGWEGEK EGEIDYVFKV VVVGDSAVGK TQLLGRFAKD QFFLDSKSTI GVEFQTRTLT LHRKQVKAQI WDTAGQERYR AVTSAYYRGA
101: LGAMVVYDVT RRATFDHVPR WVEELRAHAD GSTVVALVGN KADAPPHRRE VPADEAARFA EEQGLFFSEA SALTGDNVER AFLALLEEVF AVVSRRALEL
201: DEARRTRNGG GHDGETLSLR GTTVDLHDPI METSAMKKTA SSQCSCS
101: LGAMVVYDVT RRATFDHVPR WVEELRAHAD GSTVVALVGN KADAPPHRRE VPADEAARFA EEQGLFFSEA SALTGDNVER AFLALLEEVF AVVSRRALEL
201: DEARRTRNGG GHDGETLSLR GTTVDLHDPI METSAMKKTA SSQCSCS
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.