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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G396200.1 Wheat cytosol, golgi 95.37 95.37
TraesCS3D01G357500.1 Wheat cytosol 95.37 94.93
TraesCS3A01G364100.1 Wheat cytosol 94.91 94.91
Os03t0823700-01 Rice plasma membrane 84.72 85.12
Os03t0843100-01 Rice cytosol 70.83 68.61
Os05t0105100-01 Rice golgi, plasma membrane 68.52 67.27
Os05t0564400-02 Rice plasma membrane 65.74 65.44
Os06t0551400-01 Rice cytosol, golgi, plasma membrane, plastid 65.74 65.44
HORVU3Hr1G085710.1 Barley cytosol, plastid 94.91 65.29
Os09t0327100-01 Rice plasma membrane 64.81 64.81
Os10t0377400-01 Rice cytosol 63.89 63.89
Os06t0714600-01 Rice cytosol 53.7 51.56
Os09t0527600-01 Rice cytosol, plasma membrane 55.09 49.79
Protein Annotations
MapMan:22.8.1.1Gene3D:3.40.50.300EntrezGene:4324856EMBL:AK071303ProteinID:BAB64284.1ProteinID:BAF06719.1
ProteinID:BAS75225.1ProteinID:EAZ14149.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:Os01g0848700EnsemblPlants:Os01t0848700-01InterPro:P-loop_NTPase
PFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF458UniProt:Q941S7
SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540
InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00000A9E23RefSeq:XP_015624957.1:
Description
OsSTA36Similar to Ras-related protein Rab11C. (Os01t0848700-01)
Coordinates
chr1:-:36467919..36470441
Molecular Weight (calculated)
23923.3 Da
IEP (calculated)
6.798
GRAVY (calculated)
-0.268
Length
216 amino acids
Sequence
(BLAST)
001: MAHRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFFLE SKSTIGVEFA TRTLQIEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VFDITKRQTF
101: DNVQRWLREL RDHADANIVV MMVGNKSDLN HLRSVPEEDG HAFSEKEGLS FLETSALEAI NVEKAFHTVL SEIHQIVSKK ALAAQESAST NGRSMQGTTI
201: NVAEAPAATK GSCCSS
Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
Arabidopsis Description
RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.