Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0196500-01 | |
Os02t0565000-01 | |
Os04t0445600-00 | |
Os04t0641400-02 | |
Os05t0200280-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG40432 | Sorghum | peroxisome | 32.33 | 69.48 |
TraesCS2A01G046200.1 | Wheat | mitochondrion | 37.16 | 61.81 |
TraesCSU01G023200.1 | Wheat | plastid | 37.46 | 60.19 |
TraesCS2B01G058300.1 | Wheat | mitochondrion | 36.86 | 59.8 |
HORVU4Hr1G032500.2 | Barley | cytosol | 10.88 | 57.14 |
KXG32164 | Sorghum | plastid | 36.56 | 55.76 |
Zm00001d040242_P001 | Maize | plastid | 37.76 | 55.56 |
HORVU2Hr1G007080.13 | Barley | cytosol | 38.07 | 51.43 |
Solyc11g042620.1.1 | Tomato | plastid | 33.53 | 48.9 |
KRH77740 | Soybean | cytosol | 29.31 | 47.32 |
KRH27793 | Soybean | plastid | 31.42 | 45.81 |
GSMUA_Achr10P... | Banana | plastid | 31.12 | 45.18 |
AT1G71480.1 | Thale cress | plastid | 29.0 | 44.44 |
VIT_18s0001g05960.t01 | Wine grape | plastid | 31.42 | 39.85 |
CDX72810 | Canola | plastid | 28.7 | 39.75 |
CDY36691 | Canola | plastid | 24.47 | 39.71 |
CDX68309 | Canola | plastid | 24.17 | 37.91 |
Bra003923.1-P | Field mustard | plastid | 14.8 | 31.41 |
Protein Annotations
Gene3D:3.10.450.50 | MapMan:35.2 | EntrezGene:4346559 | EMBL:AK061549 | ProteinID:BAD38416.1 | ProteinID:BAF24630.1 |
ProteinID:BAT07133.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
GO:GO:0003964 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006278 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015074 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
GO:GO:0046983 | GO:GO:0055085 | InterPro:NTF2-like_dom_sf | EnsemblPlantsGene:Os09g0266000 | EnsemblPlants:Os09t0266000-02 | PFAM:PF12680 |
PFAM:PF13966 | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF3 | UniProt:Q67TV5 | InterPro:RVT-Znf | SUPFAM:SSF54427 |
InterPro:SnoaL-like | UniParc:UPI000042656E | SEG:seg | : | : | : |
Description
Similar to predicted protein. (Os09t0266000-01);RNA-directed DNA polymerase (reverse transcriptase), related domain containing protein. (Os09t0266000-02);Similar to predicted protein. (Os09t0266000-03)
Coordinates
chr9:+:4988981..4991687
Molecular Weight (calculated)
36671.4 Da
IEP (calculated)
10.033
GRAVY (calculated)
-0.075
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MALIHHHLAV PVAPAPPPRG LGPATAARRL TLHRRRRRSG AAAGRMTVTA SSMVEPASGE ETAARSAADV VRAFYDGVNR RDLAAVEPLI AEGCVYEDLV
101: FPNPFVGRAE ILGFFAGFMG SVSSDLRFVI DDISAGDDSR AVGVTWHLDW KGRPFPFSRG CSFYRLQLDE KQQQLQIVYG RDCVEPAVKP GESALLIIRA
201: VTWIFERFPR LANMLTKCVI GKIIWKSRAP ARCKFFMYTA MRGACLTADN LQRRGWHLAP VCHLCSQDRE TCAHIFLSCR YTQQVCATVR GRLGLSSTTP
301: SADLSSWWRS ARKSISKQDR KTFDAGVILV T
101: FPNPFVGRAE ILGFFAGFMG SVSSDLRFVI DDISAGDDSR AVGVTWHLDW KGRPFPFSRG CSFYRLQLDE KQQQLQIVYG RDCVEPAVKP GESALLIIRA
201: VTWIFERFPR LANMLTKCVI GKIIWKSRAP ARCKFFMYTA MRGACLTADN LQRRGWHLAP VCHLCSQDRE TCAHIFLSCR YTQQVCATVR GRLGLSSTTP
301: SADLSSWWRS ARKSISKQDR KTFDAGVILV T
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
Arabidopsis Description
AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.