CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06239
KRH10001
KRH23330
KRH44167
KRH47141
KRH47662
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71480.1	KRH69305	AT1G14340.1	21798944
AT1G71480.1	KRH06239	AT1G54060.1	21798944
AT1G71480.1	KRH47662	AT1G54060.1	21798944
AT1G71480.1	KRH10001	AT3G13710.1	21798944
AT1G71480.1	KRH23330	AT3G13710.1	21798944
AT1G71480.1	KRH44167	AT3G13710.1	21798944
AT1G71480.1	KRH47141	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27793	Soybean	plastid	80.49	72.69
KXG40432	Sorghum	peroxisome	44.39	59.09
AT1G71480.1	Thale cress	plastid	54.15	51.39
Solyc11g042620.1.1	Tomato	plastid	53.17	48.02
TraesCS2A01G046200.1	Wheat	mitochondrion	44.88	46.23
CDY36691	Canola	plastid	45.85	46.08
TraesCS2B01G058300.1	Wheat	mitochondrion	45.85	46.08
HORVU4Hr1G032500.2	Barley	cytosol	14.15	46.03
KXG32164	Sorghum	plastid	48.29	45.62
TraesCSU01G023200.1	Wheat	plastid	45.37	45.15
CDX68309	Canola	plastid	45.37	44.08
Zm00001d040242_P001	Maize	plastid	47.8	43.56
CDX72810	Canola	plastid	50.73	43.51
GSMUA_Achr10P...	Banana	plastid	46.34	41.67
VIT_18s0001g05960.t01	Wine grape	plastid	52.68	41.38
HORVU2Hr1G007080.13	Barley	cytosol	45.85	38.37
Bra003923.1-P	Field mustard	plastid	25.37	33.33
Os09t0266000-02	Rice	plastid	47.32	29.31
KRH64522	Soybean	plastid	22.93	17.74
KRH77576	Soybean	plastid	21.46	15.44

Protein Annotations

EMBL:ACUP02000684	EnsemblPlants:KRH77740	EnsemblPlantsGene:GLYMA_01G231300	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf	InterPro:SnoaL-like
PANTHER:PTHR33698	PANTHER:PTHR33698:SF3	PFAM:PF12680	ProteinID:KRH77740	ProteinID:KRH77740.1	SEG:seg
SUPFAM:SSF54427	UniParc:UPI0006EDA97F	UniProt:A0A0R0LFR9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:+:55833934..55835921

Molecular Weight (calculated)

23191.4 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.291

Length

205 amino acids

Sequence
(BLAST)

001: KYGSFALPKP ERRSKWRVVD GVGEKQSVTT LAATTTSFDD NDVVDSNSAV VRNFYGGINA HDVDSVEYLM AENCVYEDLV FPRPFVGRKE ILEFFKKFTN
101: STSKGLQFVI DDLSTEDSSS VGVIWHLEWK GKPFPFSKGC SFYRLEVING KRQITSDLQI NLKFCENRYG RDCVEPAIKP GDAALAAIRS VTWLLQQFPQ
201: LANWL

Best Arabidopsis Sequence Match ( AT1G71480.1 )
(BLAST)

001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF

Arabidopsis Description

AT1G71480 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9I5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.