CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028497.1-P	Field mustard	plastid	35.79	36.56
CDX67496	Canola	plastid	35.79	36.56
CDY35038	Canola	plastid	35.44	36.2
AT5G41470.1	Thale cress	plastid	34.39	35.38
Solyc08g081450.2.1	Tomato	plastid	28.77	31.66
Solyc12g056190.1.1	Tomato	plastid	29.82	31.25
PGSC0003DMT400032107	Potato	plastid	33.68	30.38
Zm00001d034934_P001	Maize	plastid	25.61	27.04
TraesCS5D01G562900.1	Wheat	plastid	22.81	25.1
TraesCS5D01G562700.1	Wheat	plastid	25.26	24.24
TraesCS7B01G001100.1	Wheat	plastid	25.26	24.16
TraesCS5B01G571800.1	Wheat	plastid	23.86	24.03
TraesCS5B01G571700.1	Wheat	plastid	25.26	23.23
TraesCS5B01G571900.1	Wheat	plastid	23.16	22.76
TraesCS5D01G562800.1	Wheat	plastid	22.46	22.22
TraesCS7B01G001000.1	Wheat	plastid	21.75	21.53
KRH77740	Soybean	cytosol	15.44	21.46
KXG37063	Sorghum	plastid	17.54	21.46
KRH64522	Soybean	plastid	19.3	20.75
KRH27793	Soybean	plastid	15.79	19.82
TraesCS6B01G336600.1	Wheat	plastid	8.77	9.62

Protein Annotations

EMBL:ACUP02000680	EnsemblPlants:KRH77576	EnsemblPlantsGene:GLYMA_01G221700	EntrezGene:100779471	Gene3D:3.10.450.50	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:NTF2-like_dom_sf	InterPro:SnoaL-like	PANTHER:PTHR33698	PANTHER:PTHR33698:SF1
PFAM:PF12680	ProteinID:KRH77576	ProteinID:KRH77576.1	ProteinID:KRH77577.1	SUPFAM:SSF54427	TMHMM:TMhelix
UniParc:UPI000294C916	UniProt:K7K592	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55082550..55085504

Molecular Weight (calculated)

33202.5 Da

IEP (calculated)

10.022

GRAVY (calculated)

-0.159

Length

285 amino acids

Sequence
(BLAST)

001: MDAVVKLSTR ASCHWPGINS NITKRLAIRL PPSRTKCNLH LHKMEIQRHS IKKNVLNKSW DRNRVLAMAS KRDPKSQQNS LSPADTVEQY YTSINDKDLR
101: QLDECISEDA CFDDYAFTKP FQGKKEVIRF LEQLTHCMGR NVTFRLKHIY EGDDLTAVAS WHLEWNEKQI PFTRGCTFFK LSKLGKNLVI WNAEVLIESP
201: IKPGSIVLTL LKNVTSIFDD FPKVTEWFLR SPNVILTWIL RVYNIFVAPW LHPLLEGYIK LWGFFVRLLN SVITVVIFIS KTFFK

Best Arabidopsis Sequence Match ( AT5G41470.1 )
(BLAST)

001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.