CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028497.1-P	Field mustard	plastid	97.13	97.13
CDX67496	Canola	plastid	95.7	95.7
AT5G41470.1	Thale cress	plastid	74.19	74.73
KRH77576	Soybean	plastid	36.2	35.44
Solyc12g056190.1.1	Tomato	plastid	29.39	30.15
Zm00001d034934_P001	Maize	plastid	28.67	29.63
Solyc08g081450.2.1	Tomato	plastid	27.24	29.34
PGSC0003DMT400032107	Potato	plastid	31.18	27.53
TraesCS5D01G562900.1	Wheat	plastid	24.37	26.25
TraesCS5B01G571800.1	Wheat	plastid	26.16	25.8
CDY36691	Canola	plastid	18.28	25.0
KXG37063	Sorghum	plastid	20.79	24.89
TraesCS5D01G562700.1	Wheat	plastid	26.16	24.58
TraesCS5D01G562800.1	Wheat	plastid	25.09	24.31
TraesCS7B01G001100.1	Wheat	plastid	25.81	24.16
TraesCS5B01G571900.1	Wheat	plastid	24.73	23.79
CDX68309	Canola	plastid	17.92	23.7
TraesCS7B01G001000.1	Wheat	plastid	24.37	23.61
TraesCS5B01G571700.1	Wheat	plastid	26.16	23.55
CDX72810	Canola	plastid	19.35	22.59
TraesCS6B01G336600.1	Wheat	plastid	12.54	13.46

Protein Annotations

EnsemblPlants:CDY35038	EnsemblPlantsGene:GSBRNA2T00057903001	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf	InterPro:SnoaL-like	PANTHER:PTHR33698
PANTHER:PTHR33698:SF1	PFAM:PF12680	ProteinID:CDY35038	ProteinID:CDY35038.1	SUPFAM:SSF54427	UniParc:UPI0004EB857C
UniProt:A0A078HE10	MapMan:35.2	:	:	:	:

Description

BnaC06g13480DBnaC06g13480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE10]

Coordinates

chrLK032345:-:403238..404712

Molecular Weight (calculated)

32061.5 Da

IEP (calculated)

9.492

GRAVY (calculated)

0.012

Length

279 amino acids

Sequence
(BLAST)

001: MASMVNIMNP MVSKNLITNF KAFRLKPDLP SLQHTRVNAI KNGPIKMMMK YGSRRSIVVS CLDQPISMPN QLSGYDAVMK FYSSINEKNQ DQLRNCISND
101: CFVDDFSFSK PFHGKKEAMK FFEELVNSMG QNVKFCVENV CEGDGYNAAV NWHIEWKGRK IPFTRGCSFY EFTDEGGILV IRNARILIES PIKPGGIALT
201: LLKNITFLFD EFPQVADWFL GKPYEIIQLT LRMYGLFLAP IIGHVIASYL KLLNNMTEFF LLILNIIIKT QSLFFKWKK

Best Arabidopsis Sequence Match ( AT5G41470.1 )
(BLAST)

001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.