Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g081450.2.1 | Tomato | plastid | 39.71 | 41.7 |
| Bra028497.1-P | Field mustard | plastid | 30.88 | 30.11 |
| AT5G41470.1 | Thale cress | plastid | 30.51 | 29.96 |
| KRH77576 | Soybean | plastid | 31.25 | 29.82 |
| CDX67496 | Canola | plastid | 30.15 | 29.39 |
| CDY35038 | Canola | plastid | 30.15 | 29.39 |
| Solyc11g042620.1.1 | Tomato | plastid | 19.85 | 23.79 |
| TraesCS5B01G571800.1 | Wheat | plastid | 24.26 | 23.32 |
| Zm00001d034934_P001 | Maize | plastid | 22.79 | 22.96 |
| TraesCS5D01G562900.1 | Wheat | plastid | 21.32 | 22.39 |
| TraesCS5D01G562700.1 | Wheat | plastid | 23.9 | 21.89 |
| TraesCS7B01G001100.1 | Wheat | plastid | 23.53 | 21.48 |
| TraesCS5D01G562800.1 | Wheat | plastid | 22.06 | 20.83 |
| TraesCS5B01G571700.1 | Wheat | plastid | 23.53 | 20.65 |
| TraesCS7B01G001000.1 | Wheat | plastid | 21.69 | 20.49 |
| TraesCS5B01G571900.1 | Wheat | plastid | 21.32 | 20.0 |
| KXG37063 | Sorghum | plastid | 15.44 | 18.03 |
| TraesCS6B01G336600.1 | Wheat | plastid | 12.87 | 13.46 |
Protein Annotations
| EnsemblPlants:Solyc12g056190.1.1 | EnsemblPlantsGene:Solyc12g056190.1 | Gene3D:3.10.450.50 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:NTF2-like_dom_sf | PANTHER:PTHR33698 | PANTHER:PTHR33698:SF1 | SEG:seg | SUPFAM:SSF54427 | TMHMM:TMhelix |
| UniParc:UPI0002769EA1 | UniProt:K4DFV0 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr12:-:62150601..62152850
Molecular Weight (calculated)
31778.3 Da
IEP (calculated)
9.897
GRAVY (calculated)
-0.249
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSSQVSWQ SLSSTQDFRY RENIPLLKAH NAKNTKLHEQ RIKIRSIKSR KRSLIAHCSM VNPNVDTSSF SPSNTIRKLY SSINNKDFNQ LALLISEDCF
101: FDDFSFPQSF HGKKEALKSL EQLTTSMDQN TEFSIDNIHE GVDLTAIVNW HLEWKKKEVP FSRGCSYYEL SRDGEKLLIK NAQVITESSM KPKILAFYNM
201: ITSIFDEFPE IVSRFVKNHQ VAYQVLLNSY KFIVQPLISP IFVWYKKLWT SIIIFVGFTT KLVQFIIKYL RQ
101: FDDFSFPQSF HGKKEALKSL EQLTTSMDQN TEFSIDNIHE GVDLTAIVNW HLEWKKKEVP FSRGCSYYEL SRDGEKLLIK NAQVITESSM KPKILAFYNM
201: ITSIFDEFPE IVSRFVKNHQ VAYQVLLNSY KFIVQPLISP IFVWYKKLWT SIIIFVGFTT KLVQFIIKYL RQ
001: MASMVNVTSI IVTRNLITKF KTPRLKLDLP SLQHSSQLNA IKNDPIKMIN KYASRRNIVV SCLDRPNSRP NQISGYDAVM KFYSSINEKN QDQLSSCISS
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
101: DCFIDDFSFP KPFRGKQEAM EFFEELVKSM GQNVKFCVEN VCEGDGHSAA VNWHLEWKGR KIPFTRGCSF YEFIDEGGRL VIRNARILIE SPIKPGGITL
201: SLLKNITFLF DEFPKGAELF LEKPYAIIQA AIRIYGLFLA PLINHVMASY LKLLSNMAEF FLLVVKIIIK IRNLFFK
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.